View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_27 (Length: 326)
Name: NF8208_1D_low_27
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 5054851 - 5054533
Alignment:
| Q |
8 |
atcttataagttaaacatacaatgtatcaagcacaaacgattaatcatacgtctaatcagttaaacacgaaatttcttatcacgtccatacgccgtaata |
107 |
Q |
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| T |
5054851 |
atcttataagttaaacatacgacgaatcaagcacaaacgattgatcatacatctaatcagctaaacacgaaatttcgtatcacgtccatacgccgtaata |
5054752 |
T |
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| Q |
108 |
ttttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaataataacaca |
207 |
Q |
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| T |
5054751 |
ttttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaataagaaccca |
5054652 |
T |
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| Q |
208 |
ttcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatgtagttagtacgttactttcttatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5054651 |
ttcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatttagttagtacgttactttcttatg |
5054552 |
T |
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| Q |
308 |
ggagctattgtttgtagtt |
326 |
Q |
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||||||||||||||||||| |
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| T |
5054551 |
ggagctattgtttgtagtt |
5054533 |
T |
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