View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_29 (Length: 322)
Name: NF8208_1D_low_29
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 41729115 - 41728837
Alignment:
| Q |
17 |
gacatcaggtaaacggatagctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaaatttgattccaattcaaa |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41729115 |
gacaccaggtaaacggatagctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaactttgattccaattcaaa |
41729016 |
T |
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| Q |
117 |
gtccttgaagggggaaacttgttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729015 |
gtccttgaagggggaaacttgttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaa |
41728916 |
T |
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| Q |
217 |
tgtaaagaaatttcatgtttttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41728915 |
tgtaaagaaatttcatgtttttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
41728837 |
T |
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