View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_3 (Length: 598)
Name: NF8208_1D_low_3
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 195 - 596
Target Start/End: Complemental strand, 18245505 - 18245104
Alignment:
| Q |
195 |
atgtgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaa |
294 |
Q |
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| T |
18245505 |
atgtgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagagagactaatgcaa |
18245406 |
T |
|
| Q |
295 |
gcacatagaatttatggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaa |
394 |
Q |
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| T |
18245405 |
gcacatagaatttatggaaacaaatgggcaatgatagctagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaa |
18245306 |
T |
|
| Q |
395 |
gaaagtacagagaacaatctaatgcatacaggagaagaagattgagccaaaatgtttatagcagaatggagcaaaatccaagcttcggccgcagggaaac |
494 |
Q |
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| T |
18245305 |
gaaagtacagagaacaatctaatgcatacaggagaagaagattgagccaaaatgtttacagcagaatggagcaaaatccaagcttcggccgcagggacac |
18245206 |
T |
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| Q |
495 |
cgcaacaatggaaacagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttcccatatgctacttctttccaacat |
594 |
Q |
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| T |
18245205 |
cgcaacaatggaaacagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttccaatatgctacttctttccaacat |
18245106 |
T |
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| Q |
595 |
tg |
596 |
Q |
| |
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|| |
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| T |
18245105 |
tg |
18245104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 18245779 - 18245654
Alignment:
| Q |
23 |
atttagtatgtgttcacatagtcttaaatttcggttgcaaaaattgttatattgcaaccataattaaaatttaaaactatgtgtatatgaacttatgaag |
122 |
Q |
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| T |
18245779 |
atttagtatgtgttcacatagtcttaaatttcggttgcaaaaattgttatattgcaaccataattaaaatttaaaactatgtgtatatgaacttatgaag |
18245680 |
T |
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| Q |
123 |
agatgtatatatttggagtttagaac |
148 |
Q |
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| T |
18245679 |
agatgtatatatttggagtttagaac |
18245654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 198 - 413
Target Start/End: Complemental strand, 31791197 - 31790982
Alignment:
| Q |
198 |
tgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaagca |
297 |
Q |
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| T |
31791197 |
tgaaggtaagagttgtaggctaagatggttcaaccaattggatccaaggattaatagaagagcttttagtgatgaagaggaagaaagattaatgcaagct |
31791098 |
T |
|
| Q |
298 |
catagaatttatggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaa |
397 |
Q |
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| T |
31791097 |
catagaatttatggtaacaaatgggccatgattgctaggcttttccctggaagaactgataatgctgttaagaatcactggcatgttataatggcaagaa |
31790998 |
T |
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| Q |
398 |
agtacagagaacaatc |
413 |
Q |
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| T |
31790997 |
agtacagagaacaatc |
31790982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 208 - 398
Target Start/End: Complemental strand, 40752178 - 40751988
Alignment:
| Q |
208 |
agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaagcacatagaattt |
307 |
Q |
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||||||||| ||||||||||||| || || ||||||||||| ||||||||| | || |||||||| || ||||| |||||| | || ||| | ||| |
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| T |
40752178 |
agttgtaggttgagatggttcaatcagctagatccaagaattaacagaagacctttcacagaagaggaagaagagagactacttgcggctcatcggattc |
40752079 |
T |
|
| Q |
308 |
atggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaa |
398 |
Q |
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| T |
40752078 |
acggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggctagaaa |
40751988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 27794420 - 27794372
Alignment:
| Q |
208 |
agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaa |
256 |
Q |
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||||||||| ||||||||||||| ||| |||| |||||||| ||||||| |
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| T |
27794420 |
agttgtaggttgagatggttcaatcaattggacccaagaataaacagaa |
27794372 |
T |
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