View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_30 (Length: 320)
Name: NF8208_1D_low_30
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 42634515 - 42634817
Alignment:
| Q |
18 |
aactaatattatcacattcatgcttgaatatcttttaaatttgttgatcaaaatgccaatactgccaacatcatgttcttgatctaatcatatagttttt |
117 |
Q |
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| T |
42634515 |
aactaatattatcacattcatgcttgaatatcttttaaatttgttgatcaaaatgccaatactgccaacatcatgttcttgatctaatcatatagttttt |
42634614 |
T |
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| Q |
118 |
acaaatggtcgtatacagggtccagcaacaccagaaaaatctgaaagccctgttagatctaggagcatgaaatctgagcattcacctggactcaaggtat |
217 |
Q |
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| T |
42634615 |
acaaatggtcgtatacagggtccagcaacaccagaaaaatctgaaagccctgttagatctaggagcatgaaatctgagcattcacctggactcaaggtat |
42634714 |
T |
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| Q |
218 |
tttctcgtaacaatgccatttgttaatttttacccaaaaagtgtgcgttcagtgtattatcaaattatttgtctgcttatggatgccattatatttcatt |
317 |
Q |
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| T |
42634715 |
tttctcgtaacaatgccatttgttaatttttacccaaaaagtgtgcattcagtgtattatcaaattatttgtctacttatggatgccattatatttcatt |
42634814 |
T |
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| Q |
318 |
gca |
320 |
Q |
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| T |
42634815 |
gca |
42634817 |
T |
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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 44097022 - 44096972
Alignment:
| Q |
24 |
tattatcacattcatgcttgaatatcttttaaatttgttgatcaaaatgcc |
74 |
Q |
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| T |
44097022 |
tattatcacattcatgcttgagtatcttttaaatttgttgatcaaaatgcc |
44096972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 14096048 - 14096078
Alignment:
| Q |
18 |
aactaatattatcacattcatgcttgaatat |
48 |
Q |
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| T |
14096048 |
aactaatattatcacattcatgcttgaatat |
14096078 |
T |
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