View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_33 (Length: 306)
Name: NF8208_1D_low_33
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_33 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 50264584 - 50264840
Alignment:
| Q |
46 |
gggtgattgggtttgtactttgttggcattacatttattgtttgcttt-atatacacaaaacaaggagtgggggcaaaagtgatcaatgaatctttacct |
144 |
Q |
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| T |
50264584 |
gggtgattgggtttgtactttgtaggcattacatttattgtttgcttttatatacacaaaacaaggagtgggggcaaaagtgatcaatgaatctttacct |
50264683 |
T |
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| Q |
145 |
accaaagtagaatgttgtaaatgtatcatatcaacgtgaattcacatgtgatggtgggtcattataattctcaaatgtgcctccaatttattgagagttc |
244 |
Q |
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| T |
50264684 |
accaaagtagaatgttgtaaatgtatc-----aacgtgaattcacatgtgatggtgggtcattataattctcaaatgtgcctccaatttattgagagttc |
50264778 |
T |
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| Q |
245 |
acattcatctaagtggaaaatgtattgtaaattaatcacaaatttttcttgtaggatacaaa |
306 |
Q |
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| T |
50264779 |
acattcatctaagtggaaaatgtattgtaaattaatcacaaatttttcttgtaggatacaaa |
50264840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 50267748 - 50267714
Alignment:
| Q |
22 |
agtggtgaagttgatgttgctggtgggtgattggg |
56 |
Q |
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| T |
50267748 |
agtggtgaagttgatgttgctggtgggtgagtggg |
50267714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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