View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_35 (Length: 295)
Name: NF8208_1D_low_35
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 35126622 - 35126444
Alignment:
| Q |
6 |
ggacatcagatattcatgcctgaatgttcttttgttagctaagagttgttggcaatttaaatttaagtgttcaatatggtataatggataaaattcaaag |
105 |
Q |
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| T |
35126622 |
ggacaccagatattcatgcctgaatgttcttttgttagctaaaagttgttggcaatttaaatttaagtgttcaatatggtataatggataaaattcaaag |
35126523 |
T |
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| Q |
106 |
caaccatgacgtaatattatattctgaatttctgatttacccacacatattcaatcaaattgatagcctccaacaccaa |
184 |
Q |
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| T |
35126522 |
catccatgacgtaatattatattctgaatttctgatttacccacacatattcaatcaaattgatagcctccaaccccaa |
35126444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 47072768 - 47072660
Alignment:
| Q |
178 |
acaccaatccatgtaccattaagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccat |
277 |
Q |
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| T |
47072768 |
acaccaatccatgtaccattaagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccat |
47072669 |
T |
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| Q |
278 |
tattgtgtt |
286 |
Q |
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| T |
47072668 |
tattgtgtt |
47072660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 18232465 - 18232505
Alignment:
| Q |
243 |
tgctaacaatttttattcatttaattgaaccccattattgt |
283 |
Q |
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| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgt |
18232505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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