View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_low_39 (Length: 284)

Name: NF8208_1D_low_39
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_low_39
NF8208_1D_low_39
[»] chr2 (1 HSPs)
chr2 (6-284)||(44671086-44671364)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 44671364 - 44671086
Alignment:
Q  6 atgagatggacatcacgaaccaagatcaagatgacaacaaaagccacacttgaaagggtggcaattgaagataaactagagaagcaacagccattgcctt 105  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671364 atgacatgaacaacacgaaccaagatcaagatgacaacaaaagccacacttgaaagggtggcaattgaagataaactagagaagcaacagccattgcctt 44671265  T
Q  106 tttccatcgaagatagtttcaagattttcaattgcagctacacatcagttgaaacccttccttcctaatgcgaccaactccagcagcgttttactgctag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671264 tttccatcgaagatagtttcaagattttcaattgcagctacacatcagttgaaacccttccttcctaatgcgaccaactccagcagcgttttactgctag 44671165  T
Q  206 cttttccttttcaggaccaacaacacacctctctcactgcacaaacaaacaatattataagtctataacaaatgaggat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671164 cttttccttttcaggaccaacaacacacctctctcactgcacaaacaaacaatattataagtctataacaaatgaggat 44671086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University