View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_41 (Length: 284)
Name: NF8208_1D_low_41
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 40636611 - 40636341
Alignment:
| Q |
13 |
acatcacgaagtggaaaatacaattggaatatgagtactacctgaagagggagatacagggacagtatgagaaccggtaaattaatacaagtgtaataga |
112 |
Q |
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| T |
40636611 |
acatcacgaagtggaaaatacaattggaatatgagtactacctgaagagggagatacagggacagtatgagaaccggtaaattaatataagtgtaataga |
40636512 |
T |
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| Q |
113 |
tgatgctccggatcagccttcttagtattgctattccttttctccccgtcttctcattggtcttctccagtttacgccttgttttggtaatgttatactc |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40636511 |
tgatgctccggatcagccttcttagtattgctcttccttttctccccgtcttctcattggtcttctccagtttacgccttgttttggtaatgttacactc |
40636412 |
T |
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| Q |
213 |
tcttgctccttgttctgcaataacttcgaaaatttgagagagcaatacatacaagatgtcccatttgttgc |
283 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| || |||| |||||| |
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| T |
40636411 |
tcttgctccttgttctgcaacaacttcgaaagtttgagagagaaatacatacaagaagttccatgtgttgc |
40636341 |
T |
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