View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_44 (Length: 275)
Name: NF8208_1D_low_44
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4862342 - 4862611
Alignment:
| Q |
1 |
aaacaccgtagcattaagtagatgctggtcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaa |
100 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862342 |
aaacaccgtagcataaagtagatgctgatcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaa |
4862441 |
T |
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| Q |
101 |
cgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcac |
200 |
Q |
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| T |
4862442 |
caaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcac |
4862541 |
T |
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| Q |
201 |
tcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc |
270 |
Q |
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| T |
4862542 |
tcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatc |
4862611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 41 - 270
Target Start/End: Complemental strand, 4698813 - 4698584
Alignment:
| Q |
41 |
gctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacactt |
140 |
Q |
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| T |
4698813 |
gctgaattggtgcttactttgcttgtttgagtctcataatcatcactgctactagtgaaacgaatatcacttccatcttcacttataaactgcgacactt |
4698714 |
T |
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| Q |
141 |
gttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaac |
240 |
Q |
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| T |
4698713 |
gttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaac |
4698614 |
T |
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| Q |
241 |
atcactcattgacattcgttgatgtccatc |
270 |
Q |
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| T |
4698613 |
atcactcatcgacatccgttgatttccatc |
4698584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 4785428 - 4785229
Alignment:
| Q |
68 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
167 |
Q |
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| T |
4785428 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4785332 |
T |
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| Q |
168 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
266 |
Q |
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| T |
4785331 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4785233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 4817857 - 4817658
Alignment:
| Q |
68 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
167 |
Q |
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|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
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| T |
4817857 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4817761 |
T |
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| Q |
168 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
266 |
Q |
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| T |
4817760 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4817662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4713512 - 4713460
Alignment:
| Q |
218 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc |
270 |
Q |
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|||| |||||||| ||||| ||||||||||| ||||||||||||| |||||| |
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| T |
4713512 |
gcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatc |
4713460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4854882 - 4854830
Alignment:
| Q |
218 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc |
270 |
Q |
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|||| |||||||| |||||| ||||||||||| ||||| ||||||| |||||| |
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| T |
4854882 |
gcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatc |
4854830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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