View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_49 (Length: 257)
Name: NF8208_1D_low_49
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 45075828 - 45076055
Alignment:
| Q |
23 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
122 |
Q |
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| T |
45075828 |
caattgtcccattgttaccttatgaacaaaattcaatagatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
45075927 |
T |
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| Q |
123 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45075928 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
45076027 |
T |
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| Q |
223 |
cagggaattgaggccattctgattcatc |
250 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45076028 |
cagggaattgaggccattctgattcatc |
45076055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 45083258 - 45083484
Alignment:
| Q |
23 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
122 |
Q |
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| T |
45083258 |
caattgtcccattgttaccttatgtagaaaattcaatagatcaaattttaatataacattaacacattttaataatggcttagctattactttatctaaa |
45083357 |
T |
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| Q |
123 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
222 |
Q |
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| T |
45083358 |
tagttaccagtaataataacatcaatgaggttagttccaaaaatgagactgctaaaccttccaccaggcttttctcttcctcttccataagatggtaaag |
45083457 |
T |
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| Q |
223 |
cagggaattgaggccattctgattcat |
249 |
Q |
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| T |
45083458 |
caggaagttgaggccaatcggattcat |
45083484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 45068211 - 45068430
Alignment:
| Q |
23 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
122 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| |||||||||||||| ||| |||| ||||||||||| ||||| ||||||| ||| |
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| T |
45068211 |
caattgtcccattgttaccttatgtagaaaattcaatagatcaaattttaattgaagtttgataaattttaata--------gctattaatttatgcaaa |
45068302 |
T |
|
| Q |
123 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
222 |
Q |
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| T |
45068303 |
tagttaccggtaattacaacatcagtgaggttagttccaaaaatgagactactaaaccttccatcaggtgcatctttttctcttccataagatggtaaaa |
45068402 |
T |
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| Q |
223 |
cagggaattgaggccattctgattcatc |
250 |
Q |
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|| |||| |||||||||||||||||| |
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| T |
45068403 |
aagataatttaggccattctgattcatc |
45068430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 45079037 - 45079166
Alignment:
| Q |
121 |
aatagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaa |
220 |
Q |
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|||| ||||| ||||| || || |||||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||| ||||| |
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| T |
45079037 |
aataattaccggtaataatcacgtcagtgaggttagttccaaaaatgagactactaaaccttccagcaggtgcatctcttccccttccataagatggtaa |
45079136 |
T |
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| Q |
221 |
aacagggaattgaggccattctgattcatc |
250 |
Q |
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| T |
45079137 |
aacaagaagttgaggccattctgattcatc |
45079166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 34505733 - 34505862
Alignment:
| Q |
121 |
aatagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaa |
220 |
Q |
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|||| ||||| ||||||||||| || ||||||| |||||| |||| |||||| ||||||||| | ||| ||||| ||||| ||||||||||| ||||| |
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| T |
34505733 |
aataattaccggtaattataacgtcggtgaggtgagttccgaaaatgagactactaaaccttggaccaggtgcatctcttccccttccataagatggtaa |
34505832 |
T |
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| Q |
221 |
aacagggaattgaggccattctgattcatc |
250 |
Q |
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| T |
34505833 |
aggaggaagctgaggccattgtgattcatc |
34505862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 41333221 - 41333176
Alignment:
| Q |
140 |
aacatcagtgaggttagttccaaaaacgagactgctaaaccttcca |
185 |
Q |
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| T |
41333221 |
aacatcagtgaggttggttccaaaaattagactgctataccttcca |
41333176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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