View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_5 (Length: 538)
Name: NF8208_1D_low_5
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 23333325 - 23333847
Alignment:
| Q |
1 |
aagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttgttatactttttgggagtattacacatagct |
100 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23333325 |
aagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttgttataccttttgggagtattacacatagct |
23333424 |
T |
|
| Q |
101 |
agaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaattag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333425 |
agaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaattag |
23333524 |
T |
|
| Q |
201 |
ggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgca |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333525 |
ggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgca |
23333624 |
T |
|
| Q |
301 |
taatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23333625 |
taatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaa |
23333724 |
T |
|
| Q |
401 |
atcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
23333725 |
atcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattt |
23333824 |
T |
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| Q |
501 |
tatcggtcaacttcgtgatgtcc |
523 |
Q |
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|||||||||||||||| |||||| |
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| T |
23333825 |
tatcggtcaacttcgttatgtcc |
23333847 |
T |
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