View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_low_52 (Length: 248)

Name: NF8208_1D_low_52
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_low_52
NF8208_1D_low_52
[»] chr2 (7 HSPs)
chr2 (1-248)||(44670746-44670993)
chr2 (63-143)||(33502279-33502356)
chr2 (80-144)||(680252-680316)
chr2 (72-144)||(16518829-16518901)
chr2 (74-133)||(11504035-11504094)
chr2 (18-133)||(33019129-33019242)
chr2 (90-144)||(15220823-15220877)
[»] chr7 (10 HSPs)
chr7 (72-206)||(40491629-40491774)
chr7 (74-143)||(32295237-32295306)
chr7 (72-144)||(45557416-45557488)
chr7 (76-143)||(26023867-26023934)
chr7 (57-116)||(39956263-39956322)
chr7 (72-135)||(17111896-17111959)
chr7 (90-144)||(40561720-40561774)
chr7 (160-206)||(48968142-48968188)
chr7 (63-103)||(41386818-41386858)
chr7 (74-134)||(42816440-42816500)
[»] chr8 (9 HSPs)
chr8 (72-144)||(32927943-32928015)
chr8 (76-138)||(38257627-38257689)
chr8 (162-209)||(38335748-38335795)
chr8 (88-134)||(9461510-9461556)
chr8 (172-206)||(9695370-9695404)
chr8 (72-142)||(35495041-35495111)
chr8 (90-143)||(2764432-2764485)
chr8 (163-204)||(34957018-34957059)
chr8 (80-133)||(37684464-37684517)
[»] chr3 (4 HSPs)
chr3 (74-214)||(31013071-31013222)
chr3 (74-134)||(31708211-31708271)
chr3 (96-144)||(1441369-1441417)
chr3 (63-144)||(41596111-41596192)
[»] chr1 (9 HSPs)
chr1 (76-144)||(35961423-35961491)
chr1 (90-206)||(213170-213297)
chr1 (75-132)||(30557556-30557613)
chr1 (63-135)||(7524155-7524227)
chr1 (146-206)||(7524249-7524309)
chr1 (146-181)||(15436030-15436065)
chr1 (72-134)||(32370003-32370065)
chr1 (63-116)||(11049292-11049345)
chr1 (76-141)||(26373509-26373574)
[»] chr6 (3 HSPs)
chr6 (76-133)||(25195339-25195396)
chr6 (74-134)||(3289798-3289857)
chr6 (63-129)||(17225894-17225960)
[»] chr5 (2 HSPs)
chr5 (159-216)||(9818869-9818926)
chr5 (74-182)||(39097299-39097407)
[»] chr4 (2 HSPs)
chr4 (63-134)||(35065105-35065176)
chr4 (18-141)||(32818333-32818456)
[»] scaffold0361 (1 HSPs)
scaffold0361 (63-144)||(14076-14157)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 44670993 - 44670746
Alignment:
Q  1 ttttggtcgtagaattgattgattctacttgaagctagaattaagtagtttatggcttttacaattgatcattacacacaaatttaaaattcaactcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670993 ttttggtcgtagaattgattgattctacttgaagctagaattaagtagtttatggcttttacaattgatcattacacacaaatttaaaattcaactcact 44670894  T
Q  101 tttaagtgaatgtatcaaaacacatatcactttacattcaactctaatcaattttatggaatcaattaattcaaaatcaattcttgtcagcacagaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670893 tttaagtgaatgtatcaaaacacatatcactttacattcaactctaatcaattttatggaatcaattaattcaaaatcaattcttgtcagcacagaacca 44670794  T
Q  201 aacatatacttaaacggaagtattaacaaacagaaagtttatggttga 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670793 aacatatacttaaacggaagtattaacaaacagaaagtttatggttga 44670746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 33502279 - 33502356
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaact 143  Q
    |||||||  ||||||||| ||||| | |||||||||||||||    |||||||| ||||||| ||||||||||||||||||    
T  33502279 aattgatttttacacacatatttatagttcaactcacttttac---aatgtatccaaacacaaatcactttacattcaact 33502356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 680316 - 680252
Alignment:
Q  80 aaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    ||||||| |||||||||||||||||  |||||||||  ||||||| | |||||||| ||||||||    
T  680316 aaatttagaattcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactc 680252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 16518829 - 16518901
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    |||| |||||||||| | |||||||||||||||  |||||||||| ||||||| |||| |||||  |||||||    
T  16518829 ttacgcacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactc 16518901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 11504094 - 11504035
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttt 133  Q
    ||||||||| ||| | |||||||||||||||  ||||||||| |||||||| ||||||||    
T  11504094 acacacaaagttatagttcaactcacttttacatgaatgtattaaaacacaaatcacttt 11504035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 33019242 - 33019129
Alignment:
Q  18 attgattctacttgaagctagaattaagtagtttatggcttttacaattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatca 117  Q
    ||||||| || ||||||||||||||  |||| || ||| ||||| |||||||  | ||||| ||||||| | |||||||||||||||  |||||| |||     
T  33019242 attgattatatttgaagctagaattt-gtagcttttgg-ttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatcc 33019145  T
Q  118 aaacacatatcacttt 133  Q
    ||||||| ||||||||    
T  33019144 aaacacaaatcacttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 15220877 - 15220823
Alignment:
Q  90 ttcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    ||||||||||||| |  |||||||||| ||||| | |||||||||||||||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactc 15220823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 40491629 - 40491774
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc-----------taatcaattttatgga 160  Q
    ||||||||||||||||| || ||||||||||||  |||||||||| ||| | | |||||||||| ||||||||            |||||||||||  ||    
T  40491629 ttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacaga 40491728  T
Q  161 atcaattaattcaaaatcaattcttgtcagcacagaaccaaacata 206  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||    
T  40491729 atcaattcactcaaaatcaattcttgtcaccgcagaaccaaacata 40491774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 32295237 - 32295306
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaact 143  Q
    ||||||||||||| |||||||||||||||||  | ||||||| |||||||| |||||||||||| |||||    
T  32295237 acacacaaatttataattcaactcacttttacataaatgtattaaaacacaaatcactttacatgcaact 32295306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 45557416 - 45557488
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    ||||||||||||||  |  ||||||||||||||  |||||||||| ||||||| |||||||||| ||||||||    
T  45557416 ttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactc 45557488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 26023867 - 26023934
Alignment:
Q  76 acacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaact 143  Q
    |||||||| || ||||||| | |||||||  | |||||||||||||||| ||||||||||||||||||    
T  26023867 acacaaatatataattcaaataacttttacataaatgtatcaaaacacaaatcactttacattcaact 26023934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 39956263 - 39956322
Alignment:
Q  57 ttttacaattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatc 116  Q
    ||||| |||||||| | ||||| ||||||| ||||||||||||||||| |||||||||||    
T  39956263 ttttataattgatcttcacacataaatttataattcaactcacttttatgtgaatgtatc 39956322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 17111896 - 17111959
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttac 135  Q
    ||||||||||||||| ||||| ||||| |||||  |||||| ||| ||||||| ||||||||||    
T  17111896 ttacacacaaatttataattctactcatttttacatgaatgcatccaaacacaaatcactttac 17111959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 40561774 - 40561720
Alignment:
Q  90 ttcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    |||||||||||||||  |||||||||| ||||| | |||||||||| ||||||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactc 40561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 48968188 - 48968142
Alignment:
Q  160 aatcaattaattcaaaatcaattcttgtcagcacagaaccaaacata 206  Q
    |||||||| ||||||||||| ||||||||| |||| |||||||||||    
T  48968188 aatcaatttattcaaaatcagttcttgtcatcacaaaaccaaacata 48968142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 41386858 - 41386818
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcactttt 103  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  41386858 aattgatatttacacacaaatttataattcaactcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 42816500 - 42816440
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    ||||||||||||| ||||||| |||||| ||  |||||||||  |||||||||||| ||||    
T  42816500 acacacaaatttataattcaattcacttctacatgaatgtatgcaaacacatatcatttta 42816440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 32927943 - 32928015
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    ||||||||||||||| | |||||||||||||||  |||||||||| ||||||| |||||||| | ||||||||    
T  32927943 ttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactc 32928015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 38257627 - 38257689
Alignment:
Q  76 acacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacatt 138  Q
    ||||||||||| ||||||||||| |||||  | |||| ||| |||||||||||||||||||||    
T  38257627 acacaaatttataattcaactcatttttacataaatgcatctaaacacatatcactttacatt 38257689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 38335795 - 38335748
Alignment:
Q  162 tcaattaattcaaaatcaattcttgtcagcacagaaccaaacatatac 209  Q
    |||||||| ||||||||||||||||||| |  ||||||||||||||||    
T  38335795 tcaattaactcaaaatcaattcttgtcaccgaagaaccaaacatatac 38335748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 9461556 - 9461510
Alignment:
Q  88 aattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    |||||||||||||||||  |||||||||| ||||||| |||||||||    
T  9461556 aattcaactcacttttatatgaatgtatccaaacacaaatcacttta 9461510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 9695404 - 9695370
Alignment:
Q  172 caaaatcaattcttgtcagcacagaaccaaacata 206  Q
    |||||||||||||||||| ||||||||||||||||    
T  9695404 caaaatcaattcttgtcaccacagaaccaaacata 9695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 35495041 - 35495111
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaac 142  Q
    |||||||||||| || | ||||||| |||||||  ||||| |||| ||||||| ||||||||| |||||||    
T  35495041 ttacacacaaatctatagttcaacttacttttacatgaatatatccaaacacaaatcactttatattcaac 35495111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 2764485 - 2764432
Alignment:
Q  90 ttcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaact 143  Q
    ||||||||||||||| ||||||||||| ||| | | ||||||||| ||||||||    
T  2764485 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatattcaact 2764432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 34957059 - 34957018
Alignment:
Q  163 caattaattcaaaatcaattcttgtcagcacagaaccaaaca 204  Q
    ||||| |||||||||||||| |||||||| ||||||||||||    
T  34957059 caattcattcaaaatcaatttttgtcagcgcagaaccaaaca 34957018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 37684464 - 37684517
Alignment:
Q  80 aaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttt 133  Q
    ||||||| |||||||||||||||||  | |||||||| ||||||| ||||||||    
T  37684464 aaatttataattcaactcacttttacataaatgtatccaaacacaaatcacttt 37684517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 31013071 - 31013222
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactct-----------aatcaattttatggaat 162  Q
    ||||||||||||| |||||||||||||| ||  |||||| ||| ||||||| |||||||||  | ||||||            |||||||||||||||||    
T  31013071 acacacaaatttagaattcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagtcggaatcaattttatggaat 31013170  T
Q  163 caattaattcaaaatcaattcttgtcagcacagaaccaaacatatacttaaa 214  Q
    ||||| | |||||||||||||||| ||   |||||||||| ||| |||||||    
T  31013171 caattcactcaaaatcaattcttgccaaagcagaaccaaatatacacttaaa 31013222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 31708271 - 31708211
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||||| | |||||||    
T  31708271 acacacaaatttataattcaactcacttttacatgaatgtatccaaacacaaaccacttta 31708211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 1441417 - 1441369
Alignment:
Q  96 tcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    ||||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactc 1441369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 41596192 - 41596111
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    |||||||  |||||||||| |||| | ||  ||||||||||   |||||||||| ||||| | |||||||||||||||||||    
T  41596192 aattgatttttacacacaagtttatagtttgactcacttttccatgaatgtatccaaacagaaatcactttacattcaactc 41596111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 35961423 - 35961491
Alignment:
Q  76 acacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    |||||||||||||||||||||||||||||  |||||||||  ||||| | |||| ||||| ||||||||    
T  35961423 acacaaatttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactc 35961491  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 213297 - 213170
Alignment:
Q  90 ttcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactct-----------aatcaattttatggaatcaattaattcaaaatc 178  Q
    |||||||||||||||  || ||||||| ||||| | |||||||||||||||| |||           ||| |||||||| ||||||||| | ||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaattcttaatcagtcaaaattaattttatagaatcaatttaatcaaaatc 213198  T
Q  179 aattcttgtcagcacagaaccaaacata 206  Q
    |||| |||||| | ||||||||||||||    
T  213197 aatttttgtcaccgcagaaccaaacata 213170  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 30557556 - 30557613
Alignment:
Q  75 cacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactt 132  Q
    |||||||||||| | |||||||||||||||  |||||||||| ||||||| |||||||    
T  30557556 cacacaaatttatagttcaactcacttttatatgaatgtatccaaacacaaatcactt 30557613  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 7524155 - 7524227
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttac 135  Q
    |||||||  ||||||||||||||| | |||||||||||||||  | ||||| || ||||||| ||||||||||    
T  7524155 aattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttac 7524227  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 7524249 - 7524309
Alignment:
Q  146 aatcaattttatggaatcaattaattcaaaatcaattcttgtcagcacagaaccaaacata 206  Q
    |||||||||||| |||||| || |  ||||||||||| |||||| ||||||||||||||||    
T  7524249 aatcaattttatagaatcagttcacccaaaatcaattattgtcaccacagaaccaaacata 7524309  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 15436030 - 15436065
Alignment:
Q  146 aatcaattttatggaatcaattaattcaaaatcaat 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  15436030 aatcaattttattgaatcaattaattcaaaatcaat 15436065  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 32370065 - 32370003
Alignment:
Q  72 ttacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    ||||||||||||||| |||| ||||  ||||||  |||||||||| ||||||| |||||||||    
T  32370065 ttacacacaaatttataattgaacttgcttttacatgaatgtatccaaacacaaatcacttta 32370003  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 11049292 - 11049345
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatc 116  Q
    |||||||  ||||||||||||||| | ||||| ||||||||| |||||||||||    
T  11049292 aattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatc 11049345  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 26373574 - 26373509
Alignment:
Q  76 acacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaa 141  Q
    |||||||||||||||||| ||||||||||  |||||||||  ||  | | ||||||||||||||||    
T  26373574 acacaaatttaaaattcatctcacttttacatgaatgtatacaagtataaatcactttacattcaa 26373509  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 25195396 - 25195339
Alignment:
Q  76 acacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttt 133  Q
    ||||||||||| |||||||||||||||||  | |||||||| ||||||| ||||||||    
T  25195396 acacaaatttacaattcaactcacttttacataaatgtatccaaacacaaatcacttt 25195339  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 3289798 - 3289857
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    ||||||||||||| |||||||||||||||||  | |||||||| ||||||| |||||||||    
T  3289798 acacacaaatttataattcaactcacttttacat-aatgtatccaaacacaaatcacttta 3289857  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 17225894 - 17225960
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatca 129  Q
    |||||||  ||||| ||||||||| | ||||||||| |||||  ||||||||||||| |||||||||    
T  17225894 aattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatcaaaccacatatca 17225960  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 9818869 - 9818926
Alignment:
Q  159 gaatcaattaattcaaaatcaattcttgtcagcacagaaccaaacatatacttaaacg 216  Q
    ||||||||| | ||||||| ||||||||||| | |||||||||||||| |||||||||    
T  9818869 gaatcaattcactcaaaataaattcttgtcaccgcagaaccaaacatacacttaaacg 9818926  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 39097299 - 39097407
Alignment:
Q  74 acacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactctaatcaattttatggaatcaattaattca 173  Q
    ||||| ||||||||| ||||||  |||||||  | |||| ||||||||||| | ||||||||||||||  |   ||||||||||  |||||||| | ||     
T  39097299 acacataaatttaaagttcaacctacttttacataaatgaatcaaaacacaaaccactttacattcaatccacttcaattttatataatcaattcactct 39097398  T
Q  174 aaatcaatt 182  Q
    |||||||||    
T  39097399 aaatcaatt 39097407  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 35065105 - 35065176
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcacttta 134  Q
    |||||||  ||||||||||||||| |  || |||||||||||  |||||||||| ||||||| |||||||||    
T  35065105 aattgatttttacacacaaatttatatctccactcacttttacatgaatgtatccaaacacaaatcacttta 35065176  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 32818456 - 32818333
Alignment:
Q  18 attgattctacttgaagctagaattaagtagtttatggcttttacaattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatca 117  Q
    |||||||||| ||||||||||||||  |||| || ||  || || |||||||  || |||||||||||| | ||||||| |||||||  ||||||||||     
T  32818456 attgattctatttgaagctagaattt-gtagcttttga-ttctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatcc 32818359  T
Q  118 aaacac--atatcactttacattcaa 141  Q
    ||||||  |||||||||||| |||||    
T  32818358 aaacacatatatcactttaccttcaa 32818333  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 14157 - 14076
Alignment:
Q  63 aattgatcattacacacaaatttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 144  Q
    |||||||  |||||| ||||||||   ||||||||||||| |  |||||||||| ||||| | |||||||||| ||||||||    
T  14157 aattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactc 14076  T

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