View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_54 (Length: 247)
Name: NF8208_1D_low_54
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 40735831 - 40736049
Alignment:
| Q |
29 |
caccgggttatttagcttaacaccatgtccaactgcaaatgtnnnnnnnn-ggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaa |
127 |
Q |
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| T |
40735831 |
caccgtgttatttagcttaa-accatgtccaactgcaaatgtaaaaaaaaaggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaa |
40735929 |
T |
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| Q |
128 |
atgaaaatgaatatgtcatagtcatataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctg |
227 |
Q |
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| T |
40735930 |
atgaaaatgaatatgtcatagtcatataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacactcctacatcaagtatctg |
40736029 |
T |
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| Q |
228 |
aaatttgcagcgatgagatg |
247 |
Q |
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| T |
40736030 |
aaatttgcagcgatgagatg |
40736049 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 37469928 - 37469779
Alignment:
| Q |
79 |
ggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaaatgaaaatgaatatgtcatagtcatataacctcctccttcgataactctga |
178 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | | |||| |||||||| |||||||||||| |
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| T |
37469928 |
ggtgagaaaagattaccaagataaatcttaatatgattttgtttagaaaatgaaaatgaaaaagggtga---atat-acctcctctgtcgataactctgg |
37469833 |
T |
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| Q |
179 |
aaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctgaaatt |
232 |
Q |
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| T |
37469832 |
aaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaatt |
37469779 |
T |
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