View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_low_55 (Length: 246)

Name: NF8208_1D_low_55
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_low_55
NF8208_1D_low_55
[»] scaffold0197 (2 HSPs)
scaffold0197 (9-214)||(19254-19459)
scaffold0197 (13-214)||(14403-14604)
[»] scaffold0028 (1 HSPs)
scaffold0028 (9-214)||(149045-149250)
[»] chr8 (8 HSPs)
chr8 (9-214)||(35745182-35745387)
chr8 (13-214)||(10684358-10684559)
chr8 (61-188)||(39784965-39785091)
chr8 (48-183)||(6311121-6311254)
chr8 (61-188)||(25328420-25328545)
chr8 (48-183)||(7290055-7290188)
chr8 (93-159)||(18853353-18853418)
chr8 (55-159)||(10689289-10689392)
[»] chr6 (13 HSPs)
chr6 (9-213)||(16838536-16838740)
chr6 (9-213)||(6005209-6005413)
chr6 (9-214)||(5343271-5343477)
chr6 (7-214)||(33330532-33330741)
chr6 (7-213)||(33336029-33336237)
chr6 (27-188)||(28155676-28155837)
chr6 (26-215)||(6438292-6438480)
chr6 (55-214)||(11856764-11856921)
chr6 (61-188)||(14737718-14737843)
chr6 (61-188)||(28184320-28184448)
chr6 (55-188)||(14742571-14742702)
chr6 (55-185)||(22010832-22010960)
chr6 (55-159)||(30125940-30126044)
[»] chr5 (18 HSPs)
chr5 (9-213)||(2785167-2785371)
chr5 (9-216)||(31401939-31402146)
chr5 (9-214)||(31397082-31397287)
chr5 (9-214)||(33791107-33791312)
chr5 (9-214)||(33767970-33768175)
chr5 (27-213)||(37561551-37561740)
chr5 (27-214)||(37556729-37556919)
chr5 (26-213)||(28807678-28807868)
chr5 (48-183)||(1457290-1457423)
chr5 (48-183)||(27444793-27444926)
chr5 (48-183)||(27449637-27449770)
chr5 (48-163)||(43592120-43592235)
chr5 (48-183)||(43598547-43598680)
chr5 (48-183)||(43604039-43604172)
chr5 (48-183)||(43609531-43609664)
chr5 (61-188)||(15044507-15044630)
chr5 (62-163)||(30631249-30631349)
chr5 (62-114)||(24135742-24135794)
[»] scaffold0259 (1 HSPs)
scaffold0259 (9-213)||(2340-2544)
[»] chr3 (15 HSPs)
chr3 (7-214)||(10207724-10207932)
chr3 (7-217)||(2677174-2677386)
chr3 (7-217)||(2673018-2673230)
chr3 (13-214)||(8516886-8517088)
chr3 (13-213)||(8512007-8512208)
chr3 (13-213)||(32475276-32475476)
chr3 (13-214)||(32480132-32480334)
chr3 (9-155)||(24967957-24968103)
chr3 (27-217)||(18656224-18656410)
chr3 (55-185)||(22173330-22173458)
chr3 (48-159)||(2671725-2671836)
chr3 (48-159)||(7167092-7167201)
chr3 (48-163)||(28503995-28504108)
chr3 (93-159)||(8739249-8739314)
chr3 (93-159)||(9091487-9091552)
[»] scaffold0009 (1 HSPs)
scaffold0009 (13-216)||(182058-182261)
[»] chr7 (13 HSPs)
chr7 (13-214)||(16879863-16880064)
chr7 (13-214)||(16884719-16884920)
chr7 (13-214)||(24261417-24261618)
chr7 (13-213)||(24266296-24266496)
chr7 (21-213)||(21812339-21812532)
chr7 (26-213)||(19992104-19992292)
chr7 (43-188)||(24024451-24024594)
chr7 (55-188)||(12396730-12396861)
chr7 (55-188)||(12406150-12406281)
chr7 (61-188)||(31109725-31109849)
chr7 (67-188)||(4866548-4866667)
chr7 (35-159)||(20357672-20357797)
chr7 (93-159)||(2057806-2057871)
[»] chr1 (7 HSPs)
chr1 (34-216)||(43988580-43988762)
chr1 (26-217)||(39445288-39445479)
chr1 (26-213)||(25445195-25445382)
chr1 (43-188)||(44023997-44024140)
chr1 (26-213)||(1055117-1055304)
chr1 (103-188)||(41386566-41386650)
chr1 (95-188)||(41398055-41398147)
[»] chr2 (7 HSPs)
chr2 (13-214)||(19349069-19349270)
chr2 (13-213)||(19344212-19344412)
chr2 (61-213)||(32246577-32246728)
chr2 (61-188)||(39812129-39812255)
chr2 (55-185)||(44312759-44312887)
chr2 (48-159)||(9296540-9296651)
chr2 (48-113)||(14291380-14291446)
[»] chr4 (9 HSPs)
chr4 (26-213)||(18855519-18855706)
chr4 (43-213)||(3813816-3813986)
chr4 (55-214)||(9224542-9224699)
chr4 (27-217)||(5732454-5732640)
chr4 (55-188)||(9229329-9229460)
chr4 (61-213)||(45347959-45348109)
chr4 (61-213)||(45357438-45357588)
chr4 (48-184)||(56146840-56146974)
chr4 (48-183)||(51520280-51520413)
[»] scaffold0464 (1 HSPs)
scaffold0464 (26-214)||(154-342)
[»] scaffold0355 (2 HSPs)
scaffold0355 (43-188)||(9764-9907)
scaffold0355 (43-188)||(13-148)
[»] scaffold0135 (1 HSPs)
scaffold0135 (55-188)||(35197-35328)
[»] scaffold0127 (1 HSPs)
scaffold0127 (103-188)||(34132-34216)
[»] scaffold0777 (1 HSPs)
scaffold0777 (165-214)||(6292-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (125-214)||(13140-13228)


Alignment Details
Target: scaffold0197 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 19254 - 19459
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19254 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 19353  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19354 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 19453  T
Q  209 caacaa 214  Q
    ||||||    
T  19454 caacaa 19459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 14403 - 14604
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  14403 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 14501  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  14502 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 14601  T
Q  212 caa 214  Q
    |||    
T  14602 caa 14604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 149045 - 149250
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  149045 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 149144  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  149145 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 149244  T
Q  209 caacaa 214  Q
    ||||||    
T  149245 caacaa 149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 35745387 - 35745182
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  35745387 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 35745288  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745287 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 35745188  T
Q  209 caacaa 214  Q
    ||||||    
T  35745187 caacaa 35745182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 10684358 - 10684559
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  10684358 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 10684456  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10684457 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 10684556  T
Q  212 caa 214  Q
    |||    
T  10684557 caa 10684559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 39784965 - 39785091
Alignment:
Q  61 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39784965 gtgtggttttgctatacactag-cttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39785063  T
Q  160 attggtttattctcattggtgtgaaggtt 188  Q
     |||||||||| |||||||||||||||||    
T  39785064 tttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 6311254 - 6311121
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| |||||||||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||  |||||||  ||||| ||||| | |||||||||    
T  6311254 ttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 6311155  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  6311154 gctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 25328420 - 25328545
Alignment:
Q  61 gtgtggttttgctatacattagacttaggct-gttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||||||||||| |||  ||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||| ||||||    
T  25328420 gtgtggttttgctatacactag--ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatc 25328517  T
Q  160 attggtttattctcattggtgtgaaggtt 188  Q
    |||| |||||| |||||| ||||||||||    
T  25328518 attgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 7290055 - 7290188
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| |||||||||||||| |||||| |||||||  ||||| ||||| | ||||| |||    
T  7290055 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctctt 7290154  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||| | ||||||| ||||||||||||    
T  7290155 gctccacacatcaat-gtttatt-tcattggtgtga 7290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 18853353 - 18853418
Alignment:
Q  93 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  18853353 tttttttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 18853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 10689289 - 10689392
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 153  Q
    ||||| ||||||||||||| |||| || |||  || |||||| ||||||||| |||||||  ||||| | |||||||||||| | ||||| |||||||||    
T  10689289 ctctttgtgtggttttgctctacactacactagggttgtttttgttgttgtt-gcttggaaaccattag-actcatagattaccactatctcttgctcca 10689386  T
Q  154 cacatc 159  Q
    ||||||    
T  10689387 cacatc 10689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 16838740 - 16838536
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16838740 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 16838641  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838640 ttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 16838541  T
Q  209 caaca 213  Q
    |||||    
T  16838540 caaca 16838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 6005413 - 6005209
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  6005413 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 6005314  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6005313 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattta 6005214  T
Q  209 caaca 213  Q
    |||||    
T  6005213 caaca 6005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 5343477 - 5343271
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttg 107  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |    
T  5343477 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttag 5343378  T
Q  108 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5343377 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattc 5343278  T
Q  208 acaacaa 214  Q
    |||||||    
T  5343277 acaacaa 5343271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 33330532 - 33330741
Alignment:
Q  7 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgt 104  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33330532 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgt 33330631  T
Q  105 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 204  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33330632 tagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccgga 33330731  T
Q  205 ttcacaacaa 214  Q
    ||||||||||    
T  33330732 ttcacaacaa 33330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 33336029 - 33336237
Alignment:
Q  7 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttg-ctatacattagacttaggctgttttgttgttgt 104  Q
    ||||||||||||| |||  ||| || ||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  33336029 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgt 33336128  T
Q  105 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 204  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336129 tagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 33336228  T
Q  205 ttcacaaca 213  Q
    |||||||||    
T  33336229 ttcacaaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 28155676 - 28155837
Alignment:
Q  27 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 124  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||| || ||||||||     
T  28155676 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgct 28155775  T
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  28155776 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 6438480 - 6438292
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||||| |    
T  6438480 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccattgg 6438383  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaa 215  Q
      ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||| || || || ||||| ||||||||||    
T  6438382 ttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaacaaa 6438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 11856921 - 11856764
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  155 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 214  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  11856821 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 11856764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 14737718 - 14737843
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 160  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  14737718 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 14737817  T
Q  161 ttggtttattctcattggtgtgaaggtt 188  Q
    || ||||||| |||||||||||||||||    
T  14737818 tt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 28184448 - 28184320
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggcca--tttgcactcatagattatctctatcacttgctccacacat 158  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||  ||||  ||||| ||||||| ||||||||||||||||||||    
T  28184448 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacat 28184349  T
Q  159 cattggtttattctcattggtgtgaaggtt 188  Q
    |||||||||||| |||||||||||||||||    
T  28184348 cattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 14742571 - 14742702
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  14742571 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccac 14742670  T
Q  155 acatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||| ||||||| |||||||||||||||||    
T  14742671 acatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 22010832 - 22010960
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  22010832 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 22010931  T
Q  155 acatcattggtttattctcattggtgtgaag 185  Q
    |||||||| ||||||| ||||||||||||||    
T  22010932 acatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 30125940 - 30126044
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 153  Q
    ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||| ||| |||||||| |||||||  ||||||||||||| ||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctcca 30126038  T
Q  154 cacatc 159  Q
    ||||||    
T  30126039 cacatc 30126044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 2785371 - 2785167
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2785371 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2785272  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785271 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 2785172  T
Q  209 caaca 213  Q
    |||||    
T  2785171 caaca 2785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 31401939 - 31402146
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  31401939 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagc 31402038  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31402039 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31402138  T
Q  209 caacaaaa 216  Q
    ||||||||    
T  31402139 caacaaaa 31402146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 31397082 - 31397287
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  31397082 ggtgtttgtttgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagc 31397181  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31397182 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31397281  T
Q  209 caacaa 214  Q
    ||||||    
T  31397282 caacaa 31397287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 33791312 - 33791107
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33791312 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33791213  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33791212 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33791113  T
Q  209 caacaa 214  Q
    ||||||    
T  33791112 caacaa 33791107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 33768175 - 33767970
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||| |||  |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33768175 ggtgtttgttcttttccttttatcgtttatcctgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33768076  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33768075 ttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33767976  T
Q  209 caacaa 214  Q
    ||||||    
T  33767975 caacaa 33767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 37561551 - 37561740
Alignment:
Q  27 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 124  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37561551 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37561650  T
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 213  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  37561651 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattcacaaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 37556729 - 37556919
Alignment:
Q  27 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 124  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37556729 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37556828  T
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag-gttcattagttgagccggattcacaacaa 214  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||| |||||||||||||||    
T  37556829 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattcacaacaa 37556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 28807678 - 28807868
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggtttt--gctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatt 120  Q
    ||||| ||||||||||||  |||||||||||||||| | ||||||||  |||||||| ||| |||||| |||||| ||||||||||||||||| ||||||    
T  28807678 ttttaccgtttatcttgtttatgcttgttagctctttgagtggttttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatt 28807775  T
Q  121 tgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 213  Q
    ||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  28807776 tgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 1457290 - 1457423
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  1457290 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 1457389  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  1457390 gctccacacatcatt-gtttatt-tcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 27444926 - 27444793
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27444926 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27444827  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  27444826 gctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 27449770 - 27449637
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27449770 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27449671  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    |||||||| |||||| ||||||| ||||||||||||    
T  27449670 gctccacatatcatt-gtttatt-tcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 43592235 - 43592120
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  43592235 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 43592136  T
Q  148 gctccacacatcattg 163  Q
    ||||||||||||||||    
T  43592135 gctccacacatcattg 43592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 43598680 - 43598547
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43598680 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43598581  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43598580 gctccacacatcatt-gtttatt-tcattggtgtga 43598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 43604172 - 43604039
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43604172 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43604073  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43604072 gctccacacatcatt-gtttatt-tcattggtgtga 43604039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 43609664 - 43609531
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43609664 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43609565  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43609564 gctccacacatcatt-gtttatt-tcattggtgtga 43609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 15044630 - 15044507
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 160  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||| | |||||| |||||||  ||||| ||||| | ||||||||||||| |||| |||    
T  15044630 gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtca 15044531  T
Q  161 ttggtttattctcattggtgtgaaggtt 188  Q
    |||   |||| |||||||||||||||||    
T  15044530 ttg---tatt-tcattggtgtgaaggtt 15044507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 30631349 - 30631249
Alignment:
Q  62 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcat 161  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||| ||||| |  |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  30631349 tgtgattttgctatacactagtctagggctgttttgttgttgtt-gcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcat 30631251  T
Q  162 tg 163  Q
    ||    
T  30631250 tg 30631249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 24135794 - 24135742
Alignment:
Q  62 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggag 114  Q
    |||||| ||||| |||| ||| ||  |||||||||||||||||||||||||||    
T  24135794 tgtggtgttgctctacactagtctagggctgttttgttgttgtttgcttggag 24135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 2340 - 2544
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2340 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2439  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 208  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2440 ttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 2539  T
Q  209 caaca 213  Q
    |||||    
T  2540 caaca 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 10207932 - 10207724
Alignment:
Q  7 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10207932 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 10207833  T
Q  106 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10207832 agcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 10207733  T
Q  206 tcacaacaa 214  Q
    |||||||||    
T  10207732 tcacaacaa 10207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 2677174 - 2677386
Alignment:
Q  7 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2677174 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2677273  T
Q  106 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccgga 204  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2677274 agcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2677373  T
Q  205 ttcacaacaaaaa 217  Q
    |||||||||||||    
T  2677374 ttcacaacaaaaa 2677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 2673018 - 2673230
Alignment:
Q  7 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2673018 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2673117  T
Q  106 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccgga 204  Q
     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2673118 agcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2673217  T
Q  205 ttcacaacaaaaa 217  Q
    |||||||||||||    
T  2673218 ttcacaacaaaaa 2673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 8517088 - 8516886
Alignment:
Q  13 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 111  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8517088 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8516989  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8516988 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8516889  T
Q  212 caa 214  Q
    |||    
T  8516888 caa 8516886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 8512208 - 8512007
Alignment:
Q  13 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 111  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8512208 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8512109  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8512108 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8512009  T
Q  212 ca 213  Q
    ||    
T  8512008 ca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 32475476 - 32475276
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32475476 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32475378  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32475377 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 32475278  T
Q  212 ca 213  Q
    ||    
T  32475277 ca 32475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 32480334 - 32480132
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttg-tttgcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32480334 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32480236  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgtgaaggttcattagttgagccggattcaca 210  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32480235 gaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattcaca 32480136  T
Q  211 acaa 214  Q
    ||||    
T  32480135 acaa 32480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 24968103 - 24967957
Alignment:
Q  9 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  24968103 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 24968004  T
Q  109 ttggaggccatttgcactcatagattatctctatcacttgctccaca 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24968003 ttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 18656410 - 18656224
Alignment:
Q  27 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 124  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  18656410 tttaccgtttatcttgtttgctttgttagctctttgtgtggtttttctatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 18656312  T
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 217  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  18656311 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 18656224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 22173330 - 22173458
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 22173429  T
Q  155 acatcattggtttattctcattggtgtgaag 185  Q
    |||||||| ||||||| ||||||||||||||    
T  22173430 acatcatt-gtttatt-tcattggtgtgaag 22173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 2671725 - 2671836
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcact 146  Q
    |||||| ||||| |||||||||| || |||| ||||||  ||||||||| |||||||||||||||||| |||||||  ||||||||||| | ||||| ||    
T  2671725 ttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctct 2671823  T
Q  147 tgctccacacatc 159  Q
    |||||||||||||    
T  2671824 tgctccacacatc 2671836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 7167201 - 7167092
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| ||||||||||||| |||| ||| ||  |||||||||||||||| |||||||||  ||||||   ||||||||||| | ||||| |||    
T  7167201 ttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttg-ttgcttggaaaccattt-tgctcatagattaccactatctctt 7167104  T
Q  148 gctccacacatc 159  Q
    ||||||||||||    
T  7167103 gctccacacatc 7167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 28503995 - 28504108
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| |   |||||||||||||||| |||||||||  ||||||   ||||||||||||| ||| |  ||    
T  28503995 ttgttatctctttgtgtggttttgctatacactagtcaagggctgttttgttgttg-ttgcttggaaaccattt-ttctcatagattatcactacctttt 28504092  T
Q  148 gctccacacatcattg 163  Q
    ||||||||||||||||    
T  28504093 gctccacacatcattg 28504108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 8739249 - 8739314
Alignment:
Q  93 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  8739249 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 8739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 9091487 - 9091552
Alignment:
Q  93 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  9091487 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 9091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 182058 - 182261
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  182058 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 182156  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  182157 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 182256  T
Q  212 caaaa 216  Q
    |||||    
T  182257 caaaa 182261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 16880064 - 16879863
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16880064 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16879966  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16879965 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16879866  T
Q  212 caa 214  Q
    |||    
T  16879865 caa 16879863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 16884920 - 16884719
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16884920 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16884822  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16884821 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16884722  T
Q  212 caa 214  Q
    |||    
T  16884721 caa 16884719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 24261417 - 24261618
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24261417 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24261515  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  24261516 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 24261615  T
Q  212 caa 214  Q
    |||    
T  24261616 caa 24261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 24266296 - 24266496
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 111  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24266296 tttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24266394  T
Q  112 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24266395 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 24266494  T
Q  212 ca 213  Q
    ||    
T  24266495 ca 24266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 21812339 - 21812532
Alignment:
Q  21 ttttgttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggcc 117  Q
    |||| ||||| ||||||||||||  |||||||||| ||||| |||||||||||||||||| ||| |||||| |||||| ||||||||| ||||||| |||    
T  21812339 ttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgttagcttggaagcc 21812436  T
Q  118 atttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 213  Q
    |||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  21812437 atttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattcacaaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 19992292 - 19992104
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| ||||||||    
T  19992292 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagccatttg 19992195  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt-cattagttgagccggattcacaaca 213  Q
      ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  19992194 ttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattcacaaca 19992104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 24024451 - 24024594
Alignment:
Q  43 tatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctat 142  Q
    ||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||    
T  24024451 tatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactat 24024550  T
Q  143 cacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  24024551 cacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 12396861 - 12396730
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12396861 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12396762  T
Q  155 acatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||| ||||||| |||||||||||||||||    
T  12396761 acatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 12406281 - 12406150
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12406281 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12406182  T
Q  155 acatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||| ||||||| |||||||||||||||||    
T  12406181 acatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 31109725 - 31109849
Alignment:
Q  61 gtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||||||||||| |||  ||||| |||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||| ||||||||    
T  31109725 gtgtggttttgctatacactag--ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatc 31109822  T
Q  160 attggtttattctcattggtgtgaaggtt 188  Q
    ||| ||||||| |||||||||||||||||    
T  31109823 att-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 4866667 - 4866548
Alignment:
Q  67 ttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtt 166  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| |||    
T  4866667 ttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtt 4866569  T
Q  167 tattctcattggtgtgaaggtt 188  Q
    |||| |||||||||||||||||    
T  4866568 tatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 20357672 - 20357797
Alignment:
Q  35 ttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcataga 132  Q
    ||||||||| ||||| |||| ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||||||| |||||||| |||||||  ||||||||    
T  20357672 ttatcttgtttgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcataga 20357770  T
Q  133 ttatctctatcacttgctccacacatc 159  Q
    ||| | ||||| |||||||||||||||    
T  20357771 ttaccactatctcttgctccacacatc 20357797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 2057871 - 2057806
Alignment:
Q  93 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  2057871 ttttgttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 2057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 43988580 - 43988762
Alignment:
Q  34 tttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagat 133  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  43988580 tttatcttgtatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagat 43988679  T
Q  134 tatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaa 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43988680 tatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaacaaaa 43988762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 39445479 - 39445288
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  39445479 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 39445382  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 217  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||    
T  39445381 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaaaaa 39445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 25445195 - 25445382
Alignment:
Q  26 ttttatcgtttatcttgtat--gcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| |||||||||||| |  |||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  25445195 ttttaccgtttatcttgtttacgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 25445292  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
      ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||    
T  25445293 ttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 44023997 - 44024140
Alignment:
Q  43 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 141  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||  ||||| ||||||| |||    
T  44023997 tatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcacta 44024094  T
Q  142 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  44024095 tcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 1055117 - 1055304
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| | ||||||    
T  1055117 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagacatttg 1055214  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  1055215 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 41386650 - 41386566
Alignment:
Q  103 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 41398147 - 41398055
Alignment:
Q  95 ttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||||||||||||||| |||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 19349270 - 19349069
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 112  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19349270 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19349171  T
Q  113 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 211  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19349170 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19349072  T
Q  212 caa 214  Q
    |||    
T  19349071 caa 19349069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 19344412 - 19344212
Alignment:
Q  13 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 112  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19344412 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19344313  T
Q  113 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 211  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19344312 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19344214  T
Q  212 ca 213  Q
    ||    
T  19344213 ca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 32246728 - 32246577
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 160  Q
    |||||||||||||||||| ||| ||  | |||||||||||||||| |||||||| |||||||  ||||||||||| | ||||||||||||||||||||||    
T  32246728 gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatca 32246629  T
Q  161 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
    |||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  32246628 ttggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 39812129 - 39812255
Alignment:
Q  61 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 159  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39812129 gtgtggttttgctatacactag-cttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39812227  T
Q  160 attggtttattctcattggtgtgaaggtt 188  Q
     |||||||||| |||||||||||||||||    
T  39812228 tttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 44312759 - 44312887
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  44312759 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 44312858  T
Q  155 acatcattggtttattctcattggtgtgaag 185  Q
    |||||||| ||||||| ||||||||||||||    
T  44312859 acatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 9296540 - 9296651
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcact 146  Q
    |||||| ||||| ||||||||||||| |||| ||||||  ||||| |||||||||||||||||||||  ||||||   ||||||||||| | ||| |  |    
T  9296540 ttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttt 9296638  T
Q  147 tgctccacacatc 159  Q
    |||||||||||||    
T  9296639 tgctccacacatc 9296651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 14291446 - 14291380
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttgga 113  Q
    |||||| ||||| ||||||||||||| |||||||| ||  ||||| |||||||||||||||||||||    
T  14291446 ttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttgcttgga 14291380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 18855706 - 18855519
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  18855706 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 18855609  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
      ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  18855608 ttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcacaaca 18855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 3813986 - 3813816
Alignment:
Q  43 tatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 141  Q
    ||||||||||||||||| |||||||||| || ||||| ||| ||  | ||||||||||||||||||||||||| |||||||| ||||| ||||| | |||    
T  3813986 tatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccacta 3813887  T
Q  142 tcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  3813886 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 9224542 - 9224699
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9224542 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9224641  T
Q  155 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 214  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  9224642 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 9224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 5732640 - 5732454
Alignment:
Q  27 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 124  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  5732640 tttaccgtttatcttgtttgctttgttagctctttgtgtggttttactatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 5732542  T
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 217  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  5732541 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 5732454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 9229329 - 9229460
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9229329 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9229428  T
Q  155 acatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||| ||||||| |||||||||||||||||    
T  9229429 acatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 45347959 - 45348109
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 160  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45347959 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45348058  T
Q  161 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45348059 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 45357438 - 45357588
Alignment:
Q  61 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 160  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45357438 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45357537  T
Q  161 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 213  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45357538 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 56146840 - 56146974
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  56146840 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 56146939  T
Q  148 gctccacacatcattggtttattctcattggtgtgaa 184  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  56146940 gctccacacatcatt-gtttatt-tcattggtgtgaa 56146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 51520413 - 51520280
Alignment:
Q  48 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 147  Q
    |||||| ||||| || ||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  51520413 ttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 51520314  T
Q  148 gctccacacatcattggtttattctcattggtgtga 183  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  51520313 gctccacacatcatt-gtttatt-tcattggtgtga 51520280  T

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Target: scaffold0464 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 342 - 154
Alignment:
Q  26 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 122  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  342 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 245  T
Q  123 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 214  Q
      ||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  244 ttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 154  T

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Target: scaffold0355 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 9764 - 9907
Alignment:
Q  43 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 141  Q
    ||||||||||||||||| |||||||||||||||| | ||| |||||| |||||||||||||||||| |||||| |||||||| ||||| ||||||| |||    
T  9764 tatgcttgttagctctt-gtgtggttttgctatatactag-cttagggctgttttgttgttgtttggttggagaccatttgctctcattgattatcacta 9861  T
Q  142 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9862 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

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Target: scaffold0355; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 13 - 148
Alignment:
Q  43 tatgcttgttagctcttagtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 141  Q
    |||||||||||||||   |||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||| |||||||| ||||| |||      ||    
T  13 tatgcttgttagctc---gtgtggttttgctatacactag-cttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------ta 102  T
Q  142 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  103 tcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

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Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 35197 - 35328
Alignment:
Q  55 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 154  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  35197 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 35296  T
Q  155 acatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||| ||||||| |||||||||||||||||    
T  35297 acatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

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Target: scaffold0127 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 34132 - 34216
Alignment:
Q  103 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 188  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

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Target: scaffold0777 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 6341 - 6292
Alignment:
Q  165 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 6292  T

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Target: scaffold0479 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 13228 - 13140
Alignment:
Q  125 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 214  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

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