View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_low_56 (Length: 245)

Name: NF8208_1D_low_56
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_low_56
NF8208_1D_low_56
[»] chr3 (3 HSPs)
chr3 (21-210)||(32368336-32368525)
chr3 (165-235)||(32368534-32368605)
chr3 (56-133)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (45-235)||(26076368-26076559)
chr4 (56-133)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (38-160)||(12370874-12370994)
chr2 (21-118)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (21-168)||(5243245-5243396)
chr7 (21-91)||(35898170-35898240)
chr7 (39-118)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (87-230)||(4958422-4958566)
chr1 (38-133)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (38-91)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (38-91)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (51-151)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 32368336 - 32368525
Alignment:
Q  21 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatcca 120  Q
    ||||||||||||| || ||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||||| ||||| |||| |||||||||||||    
T  32368336 tcacatgatgatagagcagtgattggttgtctcttagtgcaccatgaaattgcagcatcattgaatttgaataggcagccagaagtacttctcctatcca 32368435  T
Q  121 ttctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca 210  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  32368436 ttctatctccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttagtagctggaaacatcgtgccaaacttca 32368525  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 32368534 - 32368605
Alignment:
Q  165 gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaagg-tcctttcacatttctcagtatt 235  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||    
T  32368534 gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtatt 32368605  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 18645741 - 18645818
Alignment:
Q  56 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 133  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  18645741 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 18645818  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 26076559 - 26076368
Alignment:
Q  45 ggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaat 144  Q
    |||||||||||  ||||||||||||||||| || |||| || |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||    
T  26076559 ggttgtttctttttgcaccatgagattgcaacaccattgaacttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaat 26076460  T
Q  145 cagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtatt 235  Q
    |||||||||||||||  | ||| |||| |   || || | ||||||||| | ||||||||||||||| || |||||||||| ||||| ||||    
T  26076459 cagagtatccctctaattcagcttctcctactttatttgcagctggaaataacaggccaaacttcaatgtacctttcacatatctcaatatt 26076368  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 5721971 - 5722048
Alignment:
Q  56 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 133  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  5721971 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 5722048  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 12370994 - 12370874
Alignment:
Q  38 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcag 137  Q
    |||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||||| | | |||||| |||  ||||||||||||||||| |||    
T  12370994 agtgactggttgtttctttgtgcaccatgagattgcagcaccattgaacttgaataggtagctagaggtgcttttcc--tccattctatctccacaccag 12370897  T
Q  138 tctgaatcagagtatccctctag 160  Q
    |||||||||||||||||||||||    
T  12370896 tctgaatcagagtatccctctag 12370874  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 3461368 - 3461271
Alignment:
Q  21 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 118  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  3461368 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 5243396 - 5243245
Alignment:
Q  21 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaatagg----tagccataagtgcttctccta 116  Q
    ||||||||||||| || | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |    || ||| |||||||||| |||    
T  5243396 tcacatgatgatagagcattgactggttgcttcttagtacaccatgagattgcatcatcattgaacttgaataagtatatatccagaagtgcttcttcta 5243297  T
Q  117 tccattctatctccacatcagtctgaatcagagtatccctctagcttagcct 168  Q
    |||||||| | |||||| ||||| ||||| |||||||| |||||||||||||    
T  5243296 tccattctctatccacaccagtcagaatctgagtatccttctagcttagcct 5243245  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 35898240 - 35898170
Alignment:
Q  21 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 91  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  35898240 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaa 35898170  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 296638 - 296559
Alignment:
Q  39 gtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 118  Q
    |||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  296638 gtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 296559  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 4958422 - 4958566
Alignment:
Q  87 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag 186  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| ||  ||||| | ||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag 4958521  T
Q  187 ctggaaacatcaggccaaacttcaaggt-cctttcacatttctca 230  Q
     ||| || | ||||||||||||||  || |||||||||| |||||    
T  4958522 ttgggaataacaggccaaacttcagtgtgcctttcacatgtctca 4958566  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 44536499 - 44536594
Alignment:
Q  38 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 133  Q
    ||||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  44536499 agtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccaca 44536594  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 48888 - 48835
Alignment:
Q  38 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 91  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  48888 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 48835  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 28248726 - 28248673
Alignment:
Q  38 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 91  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28248726 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 28248673  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 1183107 - 1183007
Alignment:
Q  51 ttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagt 150  Q
    ||||| || |||||||| |||||| |||  || || ||||| |  |||||| | ||||||||||||||  |||||||| |||| || |||||||||||||    
T  1183107 ttctttgtacaccatgatattgcaacattgttgaacttgaagacatagccagatgtgcttctcctatcacttctatcttcacaccaatctgaatcagagt 1183008  T
Q  151 a 151  Q
    |    
T  1183007 a 1183007  T

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