View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_6 (Length: 538)
Name: NF8208_1D_low_6
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 76 - 529
Target Start/End: Original strand, 50265530 - 50265983
Alignment:
| Q |
76 |
agtgtaattgggacgcatatttatctattatgtatcaatgattaattacacattaataaaaggcaagcaagccacaaactacgccgttaggtatttttgg |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
50265530 |
agtgtaattgggacgcatatttatctattatgtatcaatgattaattacacattaataaaaggcaagcaagccacaaactacgccgttagatctttttga |
50265629 |
T |
|
| Q |
176 |
ataggaaaaacaattgtcgtaaacacaaaaatcatttctaaataaaatgnnnnnnnaaaggaaaagaggaaaagccttaaaagcattgtagcattacatt |
275 |
Q |
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| T |
50265630 |
ataggaaaaacaatcgtggtaaacacaaaaatcatttctaaataaaatgtttttttaaaggaaaagaggaaaagccttaaaagcattgtagcattacatt |
50265729 |
T |
|
| Q |
276 |
gttgacattttgagaaacaattgaggtcagtggagtgcaaacactacgggctaacattaggctgtctcccattagcatcgtttcaggaacagagtattat |
375 |
Q |
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| T |
50265730 |
gttgacattttgagaaacaattgaggtcagtggagtgcaaacactacgggctaacattaggctgtctcccattagcatcgtttcaggaacagagtattat |
50265829 |
T |
|
| Q |
376 |
aagacaacattaacaaaacattctttggaagtgatatgtagtttgtggccatggatgtggcatgtcactttgttgcgttttgaggccctcataggtcaga |
475 |
Q |
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| T |
50265830 |
aagacaacattaacaaaacattctttggaagtgatatgtagtttgtggccatggatgtggcatgtcactttgttgcgttttgaggccctcataggtcaga |
50265929 |
T |
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| Q |
476 |
atacatctaaatatagaagctttctctggtcttagttgctttttgatgtccatc |
529 |
Q |
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| T |
50265930 |
atacatctaaatatagaagctttctctggtcttagttgctttttgatgtccatc |
50265983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 25376081 - 25375990
Alignment:
| Q |
112 |
aatgattaattacacattaataaaaggcaagcaagccacaaactacgccgttaggtatttttggataggaaaaacaattgtcgtaaacacaa |
203 |
Q |
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||||||||||||||||| |||| ||||||| ||| | |||| |||| ||||||| ||||||||||| |||| |||| || ||||||||| |
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| T |
25376081 |
aatgattaattacacatgaatagaaggcaaacaaacaacaagttacgtcgttaggcctttttggatagtaaaactaattctcataaacacaa |
25375990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 45661544 - 45661639
Alignment:
| Q |
108 |
tatcaatgattaattacacattaataaaaggcaagcaagccacaaactacgccgttaggtatttttggataggaaaaacaattgtcgtaaacacaa |
203 |
Q |
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| T |
45661544 |
tatcaacgattaattacatatgagtagaaggcaagcgtgcaacaaactgtaccgttaggtctttttggatagtaaaaccaatcctcgtaaacacaa |
45661639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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