View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_62 (Length: 231)
Name: NF8208_1D_low_62
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_62 |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 13784402 - 13784178
Alignment:
| Q |
4 |
tggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgtttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
13784402 |
tggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgctgttgcctttgtgtttg |
13784303 |
T |
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| Q |
104 |
tccgaaaatggagatgtcatgttgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaat |
203 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784302 |
tccgaaaatggagatgtcctgttgcttgctaacaaagaagaacttttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaat |
13784203 |
T |
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| Q |
204 |
ttcctaacaacaaaatttgggcggc |
228 |
Q |
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||||||||||||||||||||||||| |
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| T |
13784202 |
ttcctaacaacaaaatttgggcggc |
13784178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 34065 - 33838
Alignment:
| Q |
4 |
tggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgtttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
34065 |
tggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgcgcctaattttctgttgttgcctgtgtgtttg |
33966 |
T |
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| Q |
104 |
tccgaaaatggagatgtcatgttgctcgctaacaaag---aagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttc |
200 |
Q |
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| T |
33965 |
tccgaaaatggagatgtcctgttgctggctaccaaagaaaaagatcttttaaattttgttattatgtataatcggagagatgatatagttcaatttcttc |
33866 |
T |
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| Q |
201 |
aatttcctaacaacaaaatttgggcggc |
228 |
Q |
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| T |
33865 |
gacttcctaacaaccaaatttgggcggc |
33838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40794217 - 40793987
Alignment:
| Q |
1 |
gtttggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgt |
100 |
Q |
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| T |
40794217 |
gtttggagttcaagaatcttggactcggttgatggatgttatttatgtgcatcttaaatttggtgatattgtgcctagttttatgttgttgccagtgtat |
40794118 |
T |
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| Q |
101 |
ttgtccgaaaatggagatgtcatgttgctcgct---aacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttc |
197 |
Q |
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|||||||| ||| ||||||| ||||||| ||| ||| ||| ||| ||||||| |||||||||||||||||| || |||||||||||||||||||| |
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| T |
40794117 |
ctgtccgaagatgaagatgtcctgttgctggctagcaacgaagtagatattttagattttgttattatgtataatcagatagatgatatagttgaatttc |
40794018 |
T |
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| Q |
198 |
ttcaatttcctaacaacaaaatttgggcggc |
228 |
Q |
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||||| |||||||||| |||||| |||||| |
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| T |
40794017 |
ttcaacttcctaacaatcaaatttaggcggc |
40793987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13415 - 13468
Alignment:
| Q |
1 |
gtttggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatct |
54 |
Q |
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||||||||||||||| |||||||||| |||||||||||| || ||||| ||||| |
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| T |
13415 |
gtttggagttcaagagtcttggactcagttggtgaatgttagctatgttcatct |
13468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20476015 - 20475962
Alignment:
| Q |
1 |
gtttggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatct |
54 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| || |||| |||||| |
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| T |
20476015 |
gtttggggttcaagagtcttggactcggttggtgaatgttagctatgcgcatct |
20475962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33637696 - 33637649
Alignment:
| Q |
1 |
gtttggagttcaagaatcttggactcggttggtgaatgtcagttatgt |
48 |
Q |
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||||||||||||||| ||||||||||| ||||||||||| || ||||| |
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| T |
33637696 |
gtttggagttcaagagtcttggactcgattggtgaatgttagctatgt |
33637649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3837934 - 3837972
Alignment:
| Q |
1 |
gtttggagttcaagaatcttggactcggttggtgaatgt |
39 |
Q |
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| T |
3837934 |
gtttggagttcaagagtcttggactcagttggtgaatgt |
3837972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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