View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_63 (Length: 231)
Name: NF8208_1D_low_63
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 45608330 - 45608540
Alignment:
| Q |
4 |
atgaaggcatcaataaagtgcttaacaggtatcatggtgattcttacaaaaactataatttatagcttcaacaaaatcatagcgtcattgtgattttatc |
103 |
Q |
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| T |
45608330 |
atgaaggcatcaataaagtgcttaataggtatcacggtgattcttacaaaaactataatttatagcttcaacaaaatcatagcgtcattgtgatttaatc |
45608429 |
T |
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| Q |
104 |
aaactaaccatgataccatgcactcaaatattttcaactatgactactttgtagagactgttactatgtaaataatggtgataacaattcctaattcctc |
203 |
Q |
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| T |
45608430 |
aaactaaccatgataccatgcgctcaaatattttcaa---------------agtca-tgttactacgtaaataatggtgataacaattcctaattcctc |
45608513 |
T |
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| Q |
204 |
agtcctcataaatcataatgataaaat |
230 |
Q |
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| T |
45608514 |
agtcctcataaatcataatgataaaat |
45608540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 50528525 - 50528495
Alignment:
| Q |
50 |
caaaaactataatttatagcttcaacaaaat |
80 |
Q |
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| T |
50528525 |
caaaaactataatttatagcttcaacaaaat |
50528495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 5433445 - 5433486
Alignment:
| Q |
67 |
agcttcaacaaaatcatagcgtcattgtgattttatcaaact |
108 |
Q |
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| T |
5433445 |
agcttcaacaaaatcatagcgacattgtgattttatcaaact |
5433486 |
T |
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