View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_67 (Length: 230)
Name: NF8208_1D_low_67
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_67 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24491703 - 24491863
Alignment:
| Q |
1 |
tcaagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24491703 |
tcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgcca |
24491802 |
T |
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| Q |
101 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491803 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24495261 - 24495421
Alignment:
| Q |
1 |
tcaagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24495261 |
tcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgcca |
24495360 |
T |
|
| Q |
101 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495361 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24495421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 2810261 - 2810371
Alignment:
| Q |
3 |
aagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaat |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
2810261 |
aagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattattaggacaacaaatatgtttctatatattgtaccaat |
2810360 |
T |
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| Q |
103 |
ataccttgtga |
113 |
Q |
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||||||||||| |
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| T |
2810361 |
ataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24359016 - 24359176
Alignment:
| Q |
1 |
tcaagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
100 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24359016 |
tcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgcca |
24359115 |
T |
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| Q |
101 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359116 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24359176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 86762 - 86922
Alignment:
| Q |
1 |
tcaagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86762 |
tcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
86861 |
T |
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| Q |
101 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
162 |
Q |
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| T |
86862 |
aaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 18556732 - 18556573
Alignment:
| Q |
1 |
tcaagatataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgcca |
100 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18556732 |
tcaagaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtacca |
18556633 |
T |
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| Q |
101 |
atataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
161 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
18556632 |
atataccttgtgaatgatatagca-aaaatcattattccatacatatcattattccttata |
18556573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 22684888 - 22684939
Alignment:
| Q |
162 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgt |
22684939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 22697011 - 22697062
Alignment:
| Q |
162 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgt |
213 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgt |
22697062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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