View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_68 (Length: 228)
Name: NF8208_1D_low_68
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_68 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40636990 - 40636763
Alignment:
| Q |
1 |
aacagtgttgtttatgcttgggcatgaacggacaacggtgttttgctgtgttccttgttgaataataatatttgaaataccatatatggtcttcctgtgt |
100 |
Q |
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| T |
40636990 |
aacagtgttgtttatgcttgggcatgaacggacaacggtgttttgctgtgttccttgttgaataataatatttgaaataccatatacggtcttcctgtgt |
40636891 |
T |
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| Q |
101 |
gagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcatcaagaagggact |
200 |
Q |
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| T |
40636890 |
gagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcatcaagaagggact |
40636791 |
T |
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| Q |
201 |
tgccattttgagccacgattctcagttg |
228 |
Q |
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| T |
40636790 |
tgccattttgagccacgattctcagttg |
40636763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 40628232 - 40628396
Alignment:
| Q |
64 |
aataatatttgaaataccatatatggtcttcctgtgtgagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctc |
163 |
Q |
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| T |
40628232 |
aataatatttgcaatgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctc |
40628331 |
T |
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| Q |
164 |
caacaaccacccttagcagcagcatcaagaagggacttgccattttgagccacgattctcagttg |
228 |
Q |
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| T |
40628332 |
caacaaccaccattaccagcagcatcaacaagggagcgaccattttgagccacaactctcagttg |
40628396 |
T |
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