View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_1D_low_7 (Length: 532)

Name: NF8208_1D_low_7
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_1D_low_7
NF8208_1D_low_7
[»] chr8 (2 HSPs)
chr8 (191-519)||(12171101-12171428)
chr8 (191-519)||(12415529-12415856)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 191 - 519
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
Q  191 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 287  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12171101 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12171196  T
Q  288 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 387  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12171197 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12171294  T
Q  388 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 485  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12171295 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12171394  T
Q  486 gttttcactggtgattctttcctatgatgtccat 519  Q
     ||||||||||||||| |||||||||||||||||    
T  12171395 attttcactggtgattatttcctatgatgtccat 12171428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 191 - 519
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
Q  191 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 287  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12415529 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12415624  T
Q  288 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 387  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12415625 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12415722  T
Q  388 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 485  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12415723 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12415822  T
Q  486 gttttcactggtgattctttcctatgatgtccat 519  Q
     ||||||||||||||| |||||||||||||||||    
T  12415823 attttcactggtgattatttcctatgatgtccat 12415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University