View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_71 (Length: 224)
Name: NF8208_1D_low_71
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_71 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 45076339 - 45076121
Alignment:
| Q |
6 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
105 |
Q |
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| T |
45076339 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45076240 |
T |
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| Q |
106 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
205 |
Q |
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| T |
45076239 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagattctgtcattcttgcatctcaggtata |
45076140 |
T |
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| Q |
206 |
tataatcattatacaaaag |
224 |
Q |
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||||||||||||||||||| |
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| T |
45076139 |
tataatcattatacaaaag |
45076121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 45083754 - 45083549
Alignment:
| Q |
6 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45083754 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45083655 |
T |
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| Q |
106 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
205 |
Q |
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| T |
45083654 |
ttgttccaccaggtaaatggctaactggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
45083555 |
T |
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| Q |
206 |
tataat |
211 |
Q |
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|||||| |
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| T |
45083554 |
tataat |
45083549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 45068702 - 45068503
Alignment:
| Q |
6 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
105 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068702 |
tttggtgctgttggtgacggcaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45068603 |
T |
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| Q |
106 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
205 |
Q |
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| T |
45068602 |
ttgttccaccaggtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcatctcaggtata |
45068503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 45079463 - 45079261
Alignment:
| Q |
6 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
105 |
Q |
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||||||| |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45079463 |
tttggtgctgttggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaactta |
45079364 |
T |
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| Q |
106 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
205 |
Q |
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| T |
45079363 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtata |
45079264 |
T |
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| Q |
206 |
tat |
208 |
Q |
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||| |
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| T |
45079263 |
tat |
45079261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 34506135 - 34505937
Alignment:
| Q |
6 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
105 |
Q |
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||||||| ||||||||||||||||||| ||||||||| || |||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
34506135 |
tttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaactta |
34506036 |
T |
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| Q |
106 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtat |
204 |
Q |
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| T |
34506035 |
ttgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctccaaaaaggcgcggtcattcttggatctcaggtat |
34505937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 41332905 - 41333000
Alignment:
| Q |
107 |
tgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggt |
202 |
Q |
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| T |
41332905 |
tgttccaccaggaagatggttgactggtagcttcaatctcaccagtcatttcactttattcctacacaaagatgctgtcattcttggttctcaggt |
41333000 |
T |
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