View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_76 (Length: 209)
Name: NF8208_1D_low_76
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_76 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 42635099 - 42634906
Alignment:
| Q |
16 |
tcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaaga |
115 |
Q |
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| T |
42635099 |
tcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaaga |
42635000 |
T |
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| Q |
116 |
tgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttcttatcag |
209 |
Q |
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| T |
42634999 |
tgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttcttatcag |
42634906 |
T |
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