View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_1D_low_79 (Length: 206)
Name: NF8208_1D_low_79
Description: NF8208_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_1D_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 38458919 - 38459103
Alignment:
| Q |
1 |
gattctgagaactcaaagacgtggcgatagagaaagattgagagcgtgacaaaggttatggtaggggaagaataa-gaagagtgagaggcgatggggctt |
99 |
Q |
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| T |
38458919 |
gattctgagaactca--gactcggcgacagagaaagattgagagcgtgacaaaggttatggtaggggaagaataacgaagagtgagaggtgatggggctt |
38459016 |
T |
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| Q |
100 |
tcgagaaacatggagaggttctgcaatggggttttgatagagaggttcacatcgaaggagagagataagggttcgagaaagagagct |
186 |
Q |
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| T |
38459017 |
tcgagaaacatggagaggttctgcaatggggttttgatagagaggttcacatcgaaggagagagataagggttcgagaaagagagct |
38459103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 22978963 - 22979107
Alignment:
| Q |
41 |
agagcgtgacaaaggttatggtaggggaagaataa-gaagagtgagaggcgatggggctttcgagaaacatggagaggttctgcaatggggttttgatag |
139 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22978963 |
agagcgtgacaaaggttctggtaggggaagaataacgaagagtgagaggtgatggggctttcgagaaacatggagaggttctgcaatggggttttgatag |
22979062 |
T |
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| Q |
140 |
agaggttcacatcgaaggagagagataagggttcgagaaagagag |
184 |
Q |
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| T |
22979063 |
agaggttcacatcgaaggagtgagataagggttcgagagagagag |
22979107 |
T |
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