View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208_2D_low_11 (Length: 330)
Name: NF8208_2D_low_11
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_2D_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 32725427 - 32725113
Alignment:
| Q |
1 |
tatagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggacttgttcttcttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32725427 |
tatagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggacttgttcttcttcag |
32725328 |
T |
|
| Q |
101 |
attctgatttataggatgctgattaattaagtgctaatctatactagctaaacaatcaattattcatgccatgtgcctttctaattgttttttatttact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32725327 |
attctgatttataggatgctgattaattaagtgctaatctatactagctaaacaatcaattattcatgccatgtgcctttctaattgttttttatttact |
32725228 |
T |
|
| Q |
201 |
gaccctctaaaaatggaaacaattattggtttaatgtctcatgttaagttccacttatggtagttttttgatcgttgaaggatctcaaattttgttgaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32725227 |
gaccctctaaaaatggaaacaattattggtttaatgtctcatgttaagttccacttatggtagttttttgatcgttgaaggatcttaaattttgttgaca |
32725128 |
T |
|
| Q |
301 |
aatgtgactgatgtc |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32725127 |
aatgtgactgatgtc |
32725113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 24256414 - 24256355
Alignment:
| Q |
31 |
aataagttggtgttggattggaaatcaagacgtttgctttctgcttccctttggacttgt |
90 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24256414 |
aataagttggtgttaggttggaaatcaagacgtttgctttctgcttctgtttggacttgt |
24256355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University