View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_2D_low_13 (Length: 306)
Name: NF8208_2D_low_13
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_2D_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1847246 - 1847354
Alignment:
| Q |
1 |
ttcggatgcataatttctacttgtagatgtttaacatgacttgggcacatattaacatttcacataatataataggaaaagctacttaggacagaagaag |
100 |
Q |
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| T |
1847246 |
ttcggatgcataatttctacttgtagatgtttaacatgacttgggcacatattaacatttcacataatataataggaaaagctacttaggacggaagaag |
1847345 |
T |
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| Q |
101 |
taataaccc |
109 |
Q |
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| T |
1847346 |
taataaccc |
1847354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 1847435 - 1847534
Alignment:
| Q |
190 |
gtgcgtactctgaattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaaataaaaacaaaggaataaattcacctttgaaggaag |
289 |
Q |
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| T |
1847435 |
gtgcgtactctgaattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaaataaaaacaaaggaataaattcacctttgaaggaag |
1847534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 7890135 - 7890084
Alignment:
| Q |
202 |
aattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaa |
253 |
Q |
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| T |
7890135 |
aattgtgcgaaaaacctacgaatcggtgatactgatgataagaatacatgaa |
7890084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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