View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_2D_low_19 (Length: 226)

Name: NF8208_2D_low_19
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_2D_low_19
NF8208_2D_low_19
[»] chr8 (5 HSPs)
chr8 (54-205)||(44145579-44145730)
chr8 (54-164)||(38560792-38560902)
chr8 (70-187)||(1635890-1636007)
chr8 (65-187)||(26616909-26617031)
chr8 (102-187)||(456577-456662)
[»] chr3 (7 HSPs)
chr3 (54-205)||(54812422-54812573)
chr3 (54-205)||(42794360-42794511)
chr3 (54-205)||(46428430-46428581)
chr3 (54-201)||(43912426-43912573)
chr3 (65-187)||(54346627-54346749)
chr3 (86-184)||(34265164-34265262)
chr3 (65-187)||(27156352-27156474)
[»] chr4 (7 HSPs)
chr4 (54-205)||(47597764-47597915)
chr4 (54-199)||(43270964-43271109)
chr4 (65-187)||(36894601-36894723)
chr4 (65-187)||(34389990-34390112)
chr4 (4-55)||(33841443-33841494)
chr4 (91-162)||(23409860-23409929)
chr4 (93-170)||(28561459-28561536)
[»] chr6 (4 HSPs)
chr6 (54-205)||(1223136-1223287)
chr6 (1-55)||(8293906-8293960)
chr6 (6-49)||(5934113-5934156)
chr6 (6-55)||(6817202-6817251)
[»] chr1 (7 HSPs)
chr1 (54-201)||(22065375-22065522)
chr1 (65-187)||(23085095-23085217)
chr1 (65-187)||(23949590-23949712)
chr1 (65-187)||(5308534-5308656)
chr1 (65-187)||(50952752-50952875)
chr1 (62-169)||(2601096-2601200)
chr1 (11-43)||(32920749-32920781)
[»] chr7 (5 HSPs)
chr7 (54-195)||(24473332-24473473)
chr7 (65-187)||(8019929-8020051)
chr7 (65-187)||(48618826-48618948)
chr7 (70-187)||(29213919-29214035)
chr7 (63-197)||(29760026-29760161)
[»] chr5 (8 HSPs)
chr5 (54-198)||(4560490-4560632)
chr5 (54-205)||(18883254-18883406)
chr5 (54-162)||(18933970-18934078)
chr5 (65-187)||(18259324-18259446)
chr5 (65-197)||(34080923-34081055)
chr5 (93-170)||(32216697-32216774)
chr5 (6-55)||(32236811-32236860)
chr5 (10-55)||(32249401-32249446)
[»] chr2 (9 HSPs)
chr2 (65-187)||(13186780-13186902)
chr2 (73-197)||(7305275-7305399)
chr2 (65-187)||(40190604-40190726)
chr2 (63-185)||(26381454-26381576)
chr2 (109-187)||(37307445-37307523)
chr2 (54-107)||(17290001-17290054)
chr2 (4-55)||(11158310-11158361)
chr2 (4-55)||(18834672-18834723)
chr2 (55-105)||(28372052-28372102)
[»] scaffold0003 (1 HSPs)
scaffold0003 (54-198)||(355785-355928)
[»] scaffold0140 (1 HSPs)
scaffold0140 (6-55)||(16877-16926)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 44145730 - 44145579
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44145730 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtag 44145631  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145630 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 44145579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 38560792 - 38560902
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| || |||| |||||||    
T  38560792 aagatgatcaaaatgctccctccaaaccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaaactccgatattctcagtgtag 38560891  T
Q  154 cctttaatcca 164  Q
    |||||||||||    
T  38560892 cctttaatcca 38560902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 1636007 - 1635890
Alignment:
Q  70 tccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttac 169  Q
    |||||||||| ||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1636007 tccctccaagtcatatccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttac 1635908  T
Q  170 catctgcatcacgaaaaa 187  Q
    | |||| |||||||||||    
T  1635907 cgtctgaatcacgaaaaa 1635890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 26616909 - 26617031
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| |  | ||||||||| | | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26616909 aatgttccctccaagccatgtacaaacccaaatatagcacccaaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 26617008  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  26617009 tctaccgtctgaatcacgaaaaa 26617031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 456577 - 456662
Alignment:
Q  102 cccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaa 187  Q
    ||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  456577 cccccacatctcagcatataagacatcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 456662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 54812422 - 54812573
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  54812422 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagcttcaatcttcttagtgtag 54812521  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812522 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 54812573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 42794511 - 42794360
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  42794511 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaagacatcacaagctccaatcttcttagtgtag 42794412  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42794411 cctttaatccatttaccatctgcatcgcgaaaaataccaccacaaccggaaa 42794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 46428581 - 46428430
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  46428581 aagatgatcaaaatgctccctgcaagccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaagctccaatcttcttagtgtag 46428482  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428481 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 46428430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 43912426 - 43912573
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |||| ||||||||||  ||||    
T  43912426 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaaccctcacatctcatcatgtaaggtatcacaagctcaaatcttcttaacgtag 43912525  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccg 201  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  43912526 cctttaatccatttatcatctacatcacgaaaaatatcaccacaaccg 43912573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 54346749 - 54346627
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  54346749 aatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 54346650  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  54346649 tctaccgtctgaatcacgaaaaa 54346627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 34265262 - 34265164
Alignment:
Q  86 ctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaa 184  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||| ||| ||||||| |||||||| | |||||||||||||||||||| ||||||||    
T  34265262 ctatacacaaatacaactcccacatctcagcatgtaagacatcacaagcttcaatctttttagtgtaacatttaatccatttaccatctgaatcacgaa 34265164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 27156352 - 27156474
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| ||||||||||| || || | ||||||||| |  || |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  27156352 aatgttccctccaagctatgtccaaacccaaatatagtcctcacatctcagcatgtaaggcatcacaagctctaatcttcttagtgtagcctttgatcca 27156451  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||| ||||||    
T  27156452 tctaccgtctgaatcatgaaaaa 27156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 47597764 - 47597915
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47597764 aagatgatcaaaatgctcccttcaagccatctttatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtag 47597863  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47597864 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 47597915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 43270964 - 43271109
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||| |||||||||||||||||||| |||||| | |||||||||||  ||||||||||||||||||||||||| ||||  |||||||||||||||    
T  43270964 aagatgatctaaatgctccctccaagccatgtctatatctaaatacaacccatacatctcagcatgtaaggcatcacaagctcacatcttcttagtgtag 43271063  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaac 199  Q
    ||||||||| |||||||||||| || |||||||| || ||||||||    
T  43271064 cctttaatcaatttaccatctgaattacgaaaaagactaccacaac 43271109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 36894601 - 36894723
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36894601 aatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 36894700  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||| ||||||    
T  36894701 tctaccgtctgaatcatgaaaaa 36894723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 34389990 - 34390112
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | || |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  34389990 aatgttccctccaagccatgtccaaactcaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatcca 34390089  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| | || |||||||||||    
T  34390090 tctaccgtttgaatcacgaaaaa 34390112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 33841494 - 33841443
Alignment:
Q  4 caaaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  33841494 caaaccgtacctatttttacttagttgtttcgtcgtagttggtgcagcaaaa 33841443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 23409929 - 23409860
Alignment:
Q  91 cccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatc 162  Q
    ||||||||||||| |||| |||||| |||||||||||||||  | |  |||||||||||||||| |||||||    
T  23409929 cccaaatacaaccaccacgtctcaggatgtaaggcatcaca--cacatatcttcttagtgtagcatttaatc 23409860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 28561459 - 28561536
Alignment:
Q  93 caaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttacc 170  Q
    |||||||||||||  |||||  ||||| ||| |||| || ||  || |||||||||||||||||||||||||| ||||    
T  28561459 caaatacaacccctgcatcttggcatgcaagacatctcatgcatcattcttcttagtgtagcctttaatccatctacc 28561536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 1223136 - 1223287
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1223136 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtag 1223235  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  1223236 cctttaatccatttaccatatgcgtcacgaaaaataccaccacaatcggaaa 1223287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8293960 - 8293906
Alignment:
Q  1 cagcaaaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  8293960 cagcaaaccgtatctatttttacttagttatttcgtcgtagttggtgcagtaaaa 8293906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5934156 - 5934113
Alignment:
Q  6 aaccgtacctatttttacttagttatttcgtcgtagtttgtgca 49  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  5934156 aaccgtacctatttttaattagttatttcgtcgtagttggtgca 5934113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 6817251 - 6817202
Alignment:
Q  6 aaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||| ||||    
T  6817251 aaccgtacctatttttatttagttatttcgttgtagttggtgcagcaaaa 6817202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 22065375 - 22065522
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  22065375 aagatgatcaaaatgctccctccaagccatttctatacccaaatacaacccccaaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtag 22065474  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065475 cctttaatccatttaccatctgcatcacgaaaaataccaccacaaccg 22065522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 23085095 - 23085217
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23085095 aatgttccctccaagccatgtccagacccaaatatagaccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 23085194  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  23085195 tctaccgtctgaatcacgaaaaa 23085217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 23949712 - 23949590
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23949712 aatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 23949613  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  23949612 tctaccgtctgaatcacgaaaaa 23949590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 5308656 - 5308534
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  5308656 aatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 5308557  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| | || |||||||||||    
T  5308556 tctaccgtttgaatcacgaaaaa 5308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 50952752 - 50952875
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgt-agcctttaatcc 163  Q
    |||| |||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||     
T  50952752 aatgttccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtaagcctttgatct 50952851  T
Q  164 atttaccatctgcatcacgaaaaa 187  Q
    || |||| |||| |||||||||||    
T  50952852 atctaccgtctgaatcacgaaaaa 50952875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 2601200 - 2601096
Alignment:
Q  62 caaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaat 161  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| |||   ||||||||| ||||||  ||||||||| ||||||||||||||||||    
T  2601200 caaaatgctccctccaagccatatctatacccaaatacaactcccacgtct---catgtaaggtatcacaaactccaatctacttagtgtagcctttaat 2601104  T
Q  162 ccatttac 169  Q
     |||||||    
T  2601103 tcatttac 2601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 32920781 - 32920749
Alignment:
Q  11 tacctatttttacttagttatttcgtcgtagtt 43  Q
    ||||||||||||||||||| |||||||||||||    
T  32920781 tacctatttttacttagttgtttcgtcgtagtt 32920749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 24473473 - 24473332
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  24473473 aagatgatcaaaatgctcactccaagccatctctatatccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtaa 24473374  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccacca 195  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24473373 cctttaatccatttaccatctgcatcacgaaaaataccacca 24473332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 8019929 - 8020051
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  8019929 aatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 8020028  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  8020029 tctaccgtctgaatcacgaaaaa 8020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 48618948 - 48618826
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | | ||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  48618948 aatgttccctccaagccatgtccaaatccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 48618849  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | ||||||||| ||||| |||||    
T  48618848 tctaccatctgaatcacaaaaaa 48618826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 29213919 - 29214035
Alignment:
Q  70 tccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttac 169  Q
    |||||||||||||| || | ||||||||| | |||| ||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| | |||| |||    
T  29213919 tccctccaagccatgtccaaacccaaatatagcccc-acatctcagcatgcaaggcatcacaagctctaatcttcttagtgtagcatttgacccatctac 29214017  T
Q  170 catctgcatcacgaaaaa 187  Q
    | |||  |||||||||||    
T  29214018 cgtctaaatcacgaaaaa 29214035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 29760026 - 29760161
Alignment:
Q  63 aaaatgctccctccaagccatctctatacccaaatacaa-cccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaat 161  Q
    |||||| |||||||||||||| || |   |||| ||||| |||||| |||||| ||||||| ||||||||  |||||||||||||||  || || || ||    
T  29760026 aaaatgttccctccaagccatttccaaggccaagtacaatcccccatatctcaacatgtaaagcatcacaaactccaatcttcttagcataaccattgat 29760125  T
Q  162 ccatttaccatctgcatcacgaaaaataccaccaca 197  Q
    |||||| || | || ||||| |||||  ||||||||    
T  29760126 ccattttccgtttgtatcacaaaaaaggccaccaca 29760161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 198
Target Start/End: Original strand, 4560490 - 4560632
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  4560490 aagatgatcaaaatgctccctcc--gccatctctgtacccaaatacaacccccacatctcagtatgtaaggcatcacaagctccaatcttcttagtgtag 4560587  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4560588 cctttaatccatttaccatctgcatcacgaaaaataccaccacaa 4560632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 18883406 - 18883254
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctataccc-aaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgta 152  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| || ||||||||||||| | ||||||||| |||||| |    
T  18883406 aagatgatcaaaatgctccctccaagccatatttataccccaaatacaacccccacatctcaacaagtaaggcatcacaagttccaatcttattagtgca 18883307  T
Q  153 gcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaa 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18883306 gcctttaatccatttaccatctgcatcatgaaaaataccaccacaaccggaaa 18883254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 18934078 - 18933970
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  18934078 aagatgatcaaaatgctccctctaagccatctctatacccaaatacaacctccacatctcagcatgtaaggcatcacaagctccaatctttttagtgtag 18933979  T
Q  154 cctttaatc 162  Q
    |||||||||    
T  18933978 cctttaatc 18933970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 18259324 - 18259446
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| ||||||||| |||| || | ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  18259324 aatgttccctccaaaccatgtccagacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagtctttgatcca 18259423  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||| |||||||||||    
T  18259424 tctaccgtctgaatcacgaaaaa 18259446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 34080923 - 34081055
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| | | ||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  34080923 aatgttccctccaagccatgtccaaacccaaatatagctcccacttatcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 34081022  T
Q  165 tttaccatctgcatcacgaaaaataccaccaca 197  Q
    | |||| |||| ||||||||||| ||| |||||    
T  34081023 tctaccgtctgaatcacgaaaaagaccgccaca 34081055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 32216774 - 32216697
Alignment:
Q  93 caaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttacc 170  Q
    ||||||||||||  |||| || |||| |||||||| |||  | |||||||||||| ||||||||||||||||| ||||    
T  32216774 caaatacaacccttacatatctgcatataaggcatgacacacaccaatcttcttattgtagcctttaatccatctacc 32216697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 32236860 - 32236811
Alignment:
Q  6 aaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  32236860 aaccgtacctacttttacttagttattttgtcgtagttggtgcagcaaaa 32236811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 32249446 - 32249401
Alignment:
Q  10 gtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    ||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  32249446 gtacctacttttacttagttattttgtcgtagttggtgcagcaaaa 32249401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 13186902 - 13186780
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    |||| |||||||||||||| || | ||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  13186902 aatgttccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatcca 13186803  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | |||| |||  |||||||||||    
T  13186802 tctaccgtctaaatcacgaaaaa 13186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 7305275 - 7305399
Alignment:
Q  73 ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttaccat 172  Q
    ||||||| ||| || | ||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||| |||| |    
T  7305275 ctccaagtcatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgt 7305374  T
Q  173 ctgcatcacgaaaaataccaccaca 197  Q
    ||| |||| ||||||  ||||||||    
T  7305375 ctgaatcatgaaaaaggccaccaca 7305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 40190604 - 40190726
Alignment:
Q  65 aatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatcca 164  Q
    ||||||| ||||||||||| ||||   ||||||| | ||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| |||||    
T  40190604 aatgctcgctccaagccatgtctaagtccaaatatagcccccacatcttagcatataaggcatcacaagctccaatcttcttaatgtagcctttgatcca 40190703  T
Q  165 tttaccatctgcatcacgaaaaa 187  Q
    | || | |||| |||||||||||    
T  40190704 tctaacgtctgaatcacgaaaaa 40190726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 26381454 - 26381576
Alignment:
Q  63 aaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatc 162  Q
    |||| |||| ||||||||||| || |  | |||||||||| ||||||||||||| ||||||  |||||| || |||||||||||||||||| ||||||||    
T  26381454 aaaacgctctctccaagccatgtccaatctcaaatacaacgcccacatctcagcttgtaagttatcacacgcaccaatcttcttagtgtagtctttaatc 26381553  T
Q  163 catttaccatctgcatcacgaaa 185  Q
    ||| |||| ||||  ||||||||    
T  26381554 catctaccttctgagtcacgaaa 26381576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 37307445 - 37307523
Alignment:
Q  109 atctcagcatgtaaggcatcacaggctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaa 187  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  37307445 atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaa 37307523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 17290054 - 17290001
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaaccccca 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17290054 aagatgatcaaaatgctccctccaagccatctctacacccaaatacaaccccca 17290001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 11158310 - 11158361
Alignment:
Q  4 caaaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||||| ||||    
T  11158310 caaaccgtacctatttttacttagttgtttcgtcgttgttggtgcagcaaaa 11158361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 18834672 - 18834723
Alignment:
Q  4 caaaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||| ||||    
T  18834672 caaaccgtacctatttttacttagttgtttcgttgtagttggtgcagcaaaa 18834723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 28372052 - 28372102
Alignment:
Q  55 agatgatcaaaatgctccctccaagccatctctatacccaaatacaacccc 105  Q
    ||||||||||||||||| ||  ||| ||| |||||||||||||||||||||    
T  28372052 agatgatcaaaatgctctctagaagtcatgtctatacccaaatacaacccc 28372102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 355928 - 355785
Alignment:
Q  54 aagatgatcaaaatgctccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaggctccaatcttcttagtgtag 153  Q
    ||||||||||||  |||||||||||||||  ||||||||||||||||||||| |||| || ||||||||||||||| || || ||||| ||||||||||     
T  355928 aagatgatcaaagcgctccctccaagccacatctatacccaaatacaacccc-acatttcggcatgtaaggcatcaaagacttcaatcgtcttagtgtat 355830  T
Q  154 cctttaatccatttaccatctgcatcacgaaaaataccaccacaa 198  Q
    |||||||| ||||||||||  | ||||| ||||| | ||||||||    
T  355829 cctttaattcatttaccatacgaatcacaaaaaagatcaccacaa 355785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 16877 - 16926
Alignment:
Q  6 aaccgtacctatttttacttagttatttcgtcgtagtttgtgcagtaaaa 55  Q
    ||||||| ||||||||||||| ||||||| |||||||| |||||| ||||    
T  16877 aaccgtatctatttttacttaattatttcatcgtagttggtgcagcaaaa 16926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University