View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_2D_low_21 (Length: 202)
Name: NF8208_2D_low_21
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_2D_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 37838514 - 37838701
Alignment:
| Q |
1 |
ctccaccccatattgtttcagatggtccatggagtagtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838514 |
ctccaccccatattgtttcagatggtttatggagtggtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
37838613 |
T |
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| Q |
101 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
188 |
Q |
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| T |
37838614 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
37838701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 37844077 - 37844264
Alignment:
| Q |
1 |
ctccaccccatattgtttcagatggtccatggagtagtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
100 |
Q |
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| T |
37844077 |
ctccaccccatattgtttcagatggtttatggggtggccatgaaaatggaaggagaccaatgaaatctttcttgaccttgtttgagttacaattggttat |
37844176 |
T |
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| Q |
101 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
188 |
Q |
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| T |
37844177 |
catttttgcactcacgcaaatatgtcgttttcttctcaaatctttgagactccctcaatttctttcacaaatgattgtaagtatatcc |
37844264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 38383848 - 38383661
Alignment:
| Q |
1 |
ctccaccccatattgtttcagatggtccatggagtagtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
100 |
Q |
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|||||||||||||||||||||||||| |||| || | ||||| |||| |||||||||||||||||| || || || |||||||||||||| ||| |||| |
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| T |
38383848 |
ctccaccccatattgtttcagatggtttatggggtggccacgataatggaaggagaccaatgaaatccttcttaacattgtttgagttacagttgattat |
38383749 |
T |
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| Q |
101 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
188 |
Q |
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| T |
38383748 |
catttttgcactcactcaaatatgtagtttccttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatcc |
38383661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 38392705 - 38392518
Alignment:
| Q |
1 |
ctccaccccatattgtttcagatggtccatggagtagtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
100 |
Q |
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|||||||||||||||||||||||||| |||| || | ||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||| |
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| T |
38392705 |
ctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatccttcttgatcttgtttgagttacaattggttat |
38392606 |
T |
|
| Q |
101 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
188 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||||||| || ||||||||||||||| |||| |
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| T |
38392605 |
catttttgcactcactcaaatatgtagttttcttctcaaaccattgagactccctcaattccttccagaaatgattgtaagtaaatcc |
38392518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 38401281 - 38401094
Alignment:
| Q |
1 |
ctccaccccatattgtttcagatggtccatggagtagtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttat |
100 |
Q |
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||||||| | |||||||||||||||| |||| | | |||||||||| || || ||||||||||| || || || |||||||||||||||||||||| |
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| T |
38401281 |
ctccacctcctattgtttcagatggtttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgtttgagttacaattggttat |
38401182 |
T |
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| Q |
101 |
catttttgcactcacacaaatatgcagtttccttctcaaacctttgagactccctaaattcctttcacaaatgattgtaagtatatcc |
188 |
Q |
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||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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| T |
38401181 |
catttttgcactcactcaaatatgtagttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatcc |
38401094 |
T |
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