View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_2D_low_6 (Length: 435)
Name: NF8208_2D_low_6
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_2D_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 42709373 - 42709043
Alignment:
| Q |
27 |
acccttcaaagttaatctttacgactctccaatgtttcttaagctcaattcagtctttagctgttgccttcgccatagcaagggacattcagcactggaa |
126 |
Q |
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| T |
42709373 |
acccttcaaagttaatctttacgactctccaatgtttattaagctcaattcagtctttagctgttgccttcgccatagaaagggacattcagcactggaa |
42709274 |
T |
|
| Q |
127 |
attgggttggaacgtcaccttcctcgatatagcctattgtgtaatcctctcaatttgcactggtagggaatttatagccacaggggtcgcattttactta |
226 |
Q |
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| T |
42709273 |
attgggttggaacgtcaccttcctcgctatagcctattgtgtaatcctctcaatttgtgctggtagggaatttatagccacaggggtcgcactttactta |
42709174 |
T |
|
| Q |
227 |
atgacatgggttatagagaagaaaggacctgtgtttctctctcattatagcaatcttctcctctataattctcttatcttggaaggtaattctatctact |
326 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42709173 |
atgacatgggttatagagaagaaaggatctgtgtttctttctgattattacaatcttctcctctataattctcttaccttggaaggtaattctatctact |
42709074 |
T |
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| Q |
327 |
gattaattaataaatttcgaaacatctatct |
357 |
Q |
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| T |
42709073 |
gattaattaataaatttcgaaacatctatct |
42709043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 43623294 - 43623449
Alignment:
| Q |
23 |
gactacccttcaaagttaatctttacgactctccaatgtttcttaagctcaattcagtctttagctgttgccttcgccatagcaagggacattcagcact |
122 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||| |||| | |
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| T |
43623294 |
gactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttggccatagaaagggacattgagcagt |
43623393 |
T |
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| Q |
123 |
ggaaattgggttggaacgtcaccttcctcgatatagcctattgtgtaatcctctca |
178 |
Q |
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||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||| |
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| T |
43623394 |
ggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaaacctctca |
43623449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 43623545 - 43623603
Alignment:
| Q |
206 |
acaggggtcgcattttacttaatgacatgggttatagagaagaaaggacctgtgtttct |
264 |
Q |
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| T |
43623545 |
acaggggtcggatattacttaatgacatgggtcatagagaagaaagggcctgtgtttct |
43623603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 38765750 - 38765786
Alignment:
| Q |
50 |
actctccaatgtttcttaagctcaattcagtctttag |
86 |
Q |
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| T |
38765750 |
actcttcaatgtttcttaagctcaattcagtctttag |
38765786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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