View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_2D_low_7 (Length: 410)
Name: NF8208_2D_low_7
Description: NF8208_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_2D_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 6508134 - 6507770
Alignment:
| Q |
18 |
ttgtactcttgattggtttgatatttaatatatttttgcatttnnnnnnnngacattaacataatgtccttttccttcactcaatgatcaagtcagtgtc |
117 |
Q |
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| T |
6508134 |
ttgtactcttgattggtttgatatttaatatatttttgcctttaaaaaaaagacattaacataatgtctttttccttctctcaatgatcaagttagtgtc |
6508035 |
T |
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| Q |
118 |
tttaaaagacttgccactacttccattctattctattctattctatgctctctcctcaattcacttgtcatattcttcttcccttggacactttctcacc |
217 |
Q |
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| T |
6508034 |
tttaaaagacttgccactacttccattctattctatgct---ctctactctctcctcaattcacttgtcgtattcttcttccctt--------tctcacc |
6507946 |
T |
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| Q |
218 |
attttcataaccatgtcaacctctagaacctcaaacacttcccttaaaggacatgatcatcatcacaatcaaatccaaataaatttatctttacttcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507945 |
attttcataaccatgtcaacctctagaacctcaaacacttcccttaaaggacatgatcatcatcacaatcaaatccaaataaatttatctttacttcaac |
6507846 |
T |
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| Q |
318 |
gaaacacgtcggtttgtggcgaaaaaagaggcagaaaaaagcaagccgaaccaggtaagtttcttggtgtaaggag |
393 |
Q |
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| T |
6507845 |
gaaacacttcggtttgtggcgaaaaaagaggcagaaaaaagcaagcagaaccaggtaagtttcttggtgtaaggag |
6507770 |
T |
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