View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_high_2 (Length: 411)
Name: NF8208_high_2
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 41540948 - 41541322
Alignment:
| Q |
19 |
ggagattcccataacacctataaaaattaataaaatgaaaacttctatcataccaaaaaagctcatgcaatttaatgcggacatggagtgaaacacacac |
118 |
Q |
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| T |
41540948 |
ggagattcccataacacctataaaaattaataaaatgaaaacttctatcataccaaaaaagctcatgcaatttaatgcggacatggagtgaaacacacac |
41541047 |
T |
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| Q |
119 |
ataaaaataaatactttcagcatattttaaaaaatatagtaccataatacttcttaagcttgcataactgaaagacaacaaccaaaggcagggatgagtc |
218 |
Q |
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| T |
41541048 |
ataaaaataaatactttcagcatattttaaaaaatatagtaccataatacttcttaagcttgcataactgaaagacaacaaccaaaggcagggatgagtc |
41541147 |
T |
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| Q |
219 |
atgtgtctccaagcattgttgcattttcacagcatattcatccaaagagtgcaatgaattctgtttcccctatagtatacataagagtaattagttatca |
318 |
Q |
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| T |
41541148 |
atgtgtctccaagcattgttgcatcttcacagcatattcatccaaagagtgcaatgaattctgtttcccctatagtatacataagagtaattagttatca |
41541247 |
T |
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| Q |
319 |
tgctgaaaaaataatcatagagatcgtagatattttttattttaatcatttcctaagtaatttcatgtgtatgttt |
394 |
Q |
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| T |
41541248 |
tgctgaaaaaataatcatagagatcgtagat-ttttttattttaatcatttcctaagtaattttatgtgtatgttt |
41541322 |
T |
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