View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_high_3 (Length: 360)
Name: NF8208_high_3
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 41729181 - 41728837
Alignment:
| Q |
1 |
aagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatattgccatgaaatccgacaccaggtaaacggatagctataactctagac |
100 |
Q |
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| T |
41729181 |
aagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatattgccatgaaatccgacaccaggtaaacggatagctataactctagac |
41729082 |
T |
|
| Q |
101 |
ctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaaatttgattccaattcaaagtccttgaagggggaaacttgttcacaaaatcaa |
200 |
Q |
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| T |
41729081 |
ctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaactttgattccaattcaaagtccttgaagggggaaacttgttcacaaaatcaa |
41728982 |
T |
|
| Q |
201 |
gcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaatgtaaagaaatttcatgtttttccacttcaagta |
300 |
Q |
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| T |
41728981 |
gcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaatgtaaagaaatttcatgtttttccacttcaagta |
41728882 |
T |
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| Q |
301 |
gtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
345 |
Q |
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| T |
41728881 |
gtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
41728837 |
T |
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