View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208_high_6 (Length: 272)

Name: NF8208_high_6
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208_high_6
NF8208_high_6
[»] chr6 (26 HSPs)
chr6 (1-259)||(4592061-4592319)
chr6 (58-259)||(4563598-4563799)
chr6 (146-259)||(4585608-4585724)
chr6 (169-259)||(4570970-4571060)
chr6 (162-259)||(4613762-4613859)
chr6 (167-259)||(4560502-4560594)
chr6 (1-51)||(4563517-4563567)
chr6 (167-255)||(4557121-4557209)
chr6 (168-259)||(4574305-4574396)
chr6 (160-259)||(4579421-4579520)
chr6 (171-259)||(4480693-4480781)
chr6 (162-255)||(4598162-4598255)
chr6 (171-259)||(4617022-4617110)
chr6 (171-234)||(4492955-4493018)
chr6 (152-259)||(4516302-4516409)
chr6 (7-58)||(4613968-4614019)
chr6 (177-259)||(4504441-4504523)
chr6 (171-236)||(4505857-4505922)
chr6 (171-214)||(4515210-4515253)
chr6 (68-113)||(4613888-4613933)
chr6 (171-247)||(4601789-4601865)
chr6 (177-227)||(3171747-3171797)
chr6 (177-255)||(4267214-4267292)
chr6 (177-235)||(4392094-4392152)
chr6 (167-237)||(4606957-4607027)
chr6 (171-259)||(4461123-4461211)
[»] chr8 (3 HSPs)
chr8 (160-259)||(20863887-20863986)
chr8 (171-259)||(1674226-1674314)
chr8 (140-238)||(16686332-16686432)
[»] chr5 (2 HSPs)
chr5 (171-259)||(28000143-28000231)
chr5 (177-259)||(24103005-24103087)
[»] chr3 (1 HSPs)
chr3 (171-252)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (177-259)||(4730-4812)
[»] chr7 (1 HSPs)
chr7 (177-227)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 4592061 - 4592319
Alignment:
Q  1 tataaagttaatatacatgccatataattatccaatatgcatatattcaaaccattcagtttaggcactctagctgaagatgagttcacttacatcatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  4592061 tataaagttaatatacatgccatataattatccaatatgcatatattcaaaacattcagtttaggaactcttgctgaagatgagttcacttacatcatca 4592160  T
Q  101 cttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592161 cttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaa 4592260  T
Q  201 tttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  4592261 tttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttct 4592319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 4563598 - 4563799
Alignment:
Q  58 agtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa 157  Q
    |||| ||| ||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||    
T  4563598 agttcaggaactcttgctgaagatgacttcacttacatcagaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaa 4563697  T
Q  158 -ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttct 256  Q
     ||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| | |||||| | ||||    
T  4563698 gttacttaaa-ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttct 4563796  T
Q  257 tct 259  Q
    |||    
T  4563797 tct 4563799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 4585608 - 4585724
Alignment:
Q  146 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct 242  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| |||||||| || ||||||||||||||||||||||||      
T  4585608 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc 4585707  T
Q  243 ctcctccgccttcttct 259  Q
    |||||||||||||||||    
T  4585708 ctcctccgccttcttct 4585724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 4570970 - 4571060
Alignment:
Q  169 tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttct 4571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 4613859 - 4613762
Alignment:
Q  162 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    |||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttct 4613762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 4560502 - 4560594
Alignment:
Q  167 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||  | |||||||||| ||||    
T  4560502 tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttct 4560594  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4563517 - 4563567
Alignment:
Q  1 tataaagttaatatacatgccatataattatccaatatgcatatattcaaa 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4563517 tataaagttaatatacatgccatataattatccaatatgcatatattcaaa 4563567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 4557121 - 4557209
Alignment:
Q  167 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 255  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| ||||||||||||  |||||||||||||    
T  4557121 tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4557209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 4574305 - 4574396
Alignment:
Q  168 ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    |||||||| |||||||||||||||||| |||| ||| ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttct 4574396  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 4579421 - 4579520
Alignment:
Q  160 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    |||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||  ||||||| |||||||||    
T  4579421 acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct 4579520  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 4480693 - 4480781
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||| |||  |||||| ||| ||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttct 4480781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 4598162 - 4598255
Alignment:
Q  162 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 255  Q
    |||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||   |||||||||||||    
T  4598162 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttc 4598255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 4617022 - 4617110
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 4617110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 4492955 - 4493018
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggt 234  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggt 4493018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 4516302 - 4516409
Alignment:
Q  152 aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc 251  Q
    ||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| |||  |||||| ||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc 4516401  T
Q  252 cttcttct 259  Q
    ||||||||    
T  4516402 cttcttct 4516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 4614019 - 4613968
Alignment:
Q  7 gttaatatacatgccatataattatccaatatgcatatattcaaaccattca 58  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  4614019 gttaatatacctgctatataattatccaatgtgcatatattcaaaccattca 4613968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 4504523 - 4504441
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| |||  |||||| ||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttct 4504441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 4505857 - 4505922
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 236  Q
    ||||| |||||||||||||||||| || | |||||||||||||||  |||||||||| ||||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtct 4505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 4515253 - 4515210
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttca 214  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttca 4515210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 4613933 - 4613888
Alignment:
Q  68 ctctagctgaagatgagttcacttacatcatcacttaaattcaata 113  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4613933 ctcttgctgaagatcagttcatttacatcatcacttaaattcaata 4613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 4601789 - 4601865
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcct 247  Q
    ||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| ||  |||| ||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcct 4601865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 3171747 - 3171797
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 227  Q
    ||||||||| |||||||| |||| ||| ||||||||||| |||||||||||    
T  3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaacc 3171797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 4267292 - 4267214
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 255  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || ||||||    
T  4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 4392152 - 4392094
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtc 235  Q
    ||||||||| |||||||| |||| |||||||||||||||  ||||| |||| |||||||    
T  4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtc 4392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
Q  167 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 237  Q
    ||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || ||||||    
T  4607027 tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc 4606957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 4461123 - 4461211
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||| ||||||||| || ||||| || | ||||||||||||| | ||||||  |||||||||||| ||   ||||||| |||||||||    
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttct 4461211  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 20863986 - 20863887
Alignment:
Q  160 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| |||  |||||| ||||||||||    
T  20863986 acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct 20863887  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 1674226 - 1674314
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 1674314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 16686432 - 16686332
Alignment:
Q  140 actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 237  Q
    ||||| ||||||||||||  | |||||  ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||||    
T  16686432 actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc 16686333  T
Q  238 g 238  Q
    |    
T  16686332 g 16686332  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 28000231 - 28000143
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||| ||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttct 28000143  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 24103005 - 24103087
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||| ||| ||| |||| || ||||||||||    
T  24103005 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttct 24103087  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  171 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgcc 252  Q
    ||||| |||||||||||  ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| |||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

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Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 4812 - 4730
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 259  Q
    ||||||||  |||||||| |||| ||||||||||||||| |||||||| || ||||  || ||| ||||||| ||||||||||    
T  4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttct 4730  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  177 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 227  Q
    ||||||||| |||||||| || | ||||||||||||||| |||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

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