View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208_low_1 (Length: 586)
Name: NF8208_low_1
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_low_1 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
| [»] scaffold1521 (1 HSPs) |
| | |
|
| [»] scaffold0152 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 16855931 - 16856485
Alignment:
| Q |
18 |
atattccaagctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactcct |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16855931 |
atattctaaactacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactcct |
16856030 |
T |
|
| Q |
118 |
tcaaaccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaagtaaatgaataggaatatatacatcaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16856031 |
tcaaaccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaagtaattgaataggaatatacacatcaatg |
16856130 |
T |
|
| Q |
218 |
ttaaccaaatgtaactgaacattattattttaattnnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856131 |
ttaaccaaatgtaactgaacattattattttaattaaaaaaaaaa--cagaacttttacatccttcattcttataaccccttcaactactattttttaaa |
16856228 |
T |
|
| Q |
318 |
aacattgattatttgttataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856229 |
aacattgattatttgttataatatttacaccatcgccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcat |
16856328 |
T |
|
| Q |
418 |
ccatatttccctttttccctttcacctatatgataaccaacgcaaatctcattccttttcttctcattctgtaatatttgatgatcaattttatcatttc |
517 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
16856329 |
ccatatttctctttttccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtagtatttgttgatcaattttatcattta |
16856428 |
T |
|
| Q |
518 |
cctcannnnnnnncttgacttttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856429 |
cctca--ttttttcttgacttttccaccatgtctactattgatgtcaataacaccaaac |
16856485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 8643620 - 8643580
Alignment:
| Q |
19 |
tattccaagctacattttgcttacatgtcacttcactaatg |
59 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
8643620 |
tattctaagctacattttgcttacatgtcacctcacaaatg |
8643580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 27 - 576
Target Start/End: Complemental strand, 47933964 - 47933427
Alignment:
| Q |
27 |
gctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933964 |
gctacattttgcttacatgtcacttcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccat |
47933865 |
T |
|
| Q |
127 |
tatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaagtaaatgaataggaatatatacatcaatgttaaccaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
47933864 |
tatacataataattttgataaaaagagttatactaatcaattgcaatcttaataagaaagaagtaattgaataggaatatgcacatcaatgttaaccaaa |
47933765 |
T |
|
| Q |
227 |
tgtaactgaacattattattttaattnnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933764 |
tgtaactgaacattattattttaatt-aaaaaaaaaaacagaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgat |
47933666 |
T |
|
| Q |
327 |
tatttgttataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttc |
426 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47933665 |
tatttgtt-taatatttacaccatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttc |
47933567 |
T |
|
| Q |
427 |
cctttttccctttcacctatatgataaccaacgcaaatctcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctcannnn |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47933566 |
cctttttccctttcacctatatgataaccaacgcaaatctcattccttttat--------ggtaatatttgatgatcaattttatcatttgcctca--tt |
47933477 |
T |
|
| Q |
527 |
nnnncttgacttttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933476 |
ttttcttgacttttccaccatgtctactattgatgtcaataacaccaaac |
47933427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 27 - 576
Target Start/End: Complemental strand, 54946766 - 54946229
Alignment:
| Q |
27 |
gctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946766 |
gctacattttgcttacatgtcacttcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccat |
54946667 |
T |
|
| Q |
127 |
tatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaagtaaatgaataggaatatatacatcaatgttaaccaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
54946666 |
tatacataataattttgataaaaagagttatactaatcaattgcaatcttaataagaaagaagtaattgaataggaatatgcacatcaatgttaaccaaa |
54946567 |
T |
|
| Q |
227 |
tgtaactgaacattattattttaattnnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946566 |
tgtaactgaacattattattttaatt-aaaaaaaaaaacagaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgat |
54946468 |
T |
|
| Q |
327 |
tatttgttataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttc |
426 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54946467 |
tatttgtt-taatatttacaccatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttc |
54946369 |
T |
|
| Q |
427 |
cctttttccctttcacctatatgataaccaacgcaaatctcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctcannnn |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54946368 |
cctttttccctttcacctatatgataaccaacgcaaatctcattccttttat--------ggtaatatttgatgatcaattttatcatttgcctca--tt |
54946279 |
T |
|
| Q |
527 |
nnnncttgacttttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946278 |
ttttcttgacttttccaccatgtctactattgatgtcaataacaccaaac |
54946229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 266 - 576
Target Start/End: Complemental strand, 5885520 - 5885212
Alignment:
| Q |
266 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcacaattgaatttgt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
5885520 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
5885421 |
T |
|
| Q |
366 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885420 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
5885321 |
T |
|
| Q |
466 |
tcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctcannnnnnnncttgacttttccaccatgtctactattgatgtcaa |
565 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885320 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctca--ttttttcttgacttttccaccatgtctactattgatgtcaa |
5885223 |
T |
|
| Q |
566 |
taacaccaaac |
576 |
Q |
| |
|
||||||||||| |
|
|
| T |
5885222 |
taacaccaaac |
5885212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 5885683 - 5885517
Alignment:
| Q |
19 |
tattccaagctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactcctt |
118 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5885683 |
tattctaacctacattttgcttacatgtcacttcaccaatgatcctctttctaacttttattcttgatcattctactactttgcttatgtgtca---ctt |
5885587 |
T |
|
| Q |
119 |
caaaccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa |
188 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885586 |
caagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa |
5885517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 576
Target Start/End: Complemental strand, 11575 - 10998
Alignment:
| Q |
19 |
tattccaagctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactcctt |
118 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||| ||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
11575 |
tattctaagctacattttgattacatgtcacctcaccaatgaccctctttttaacttttattcttgatcattcttctactttgcttatgtgtcacttcct |
11476 |
T |
|
| Q |
119 |
caaaccattatacataataattttgataaaaa------gagttacactaatcaattgcaatcttaataagaaagaagtaaatga------ataggaatat |
206 |
Q |
| |
|
||| ||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
11475 |
caatccattatacatcatagttttgataaaaataaaaagagttacaataatcaattgcaatcttaataagaaagaacattattatttttaataggaatat |
11376 |
T |
|
| Q |
207 |
atacatcaatgttaaccaaatgtaactgaacattattattttaattnnnnnnnnnnnncagaacttttacatccttcattcttataaccccttcaactac |
306 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11375 |
acacattaatgttaaccaaatgtaactgaacattattattttaattaaaaaaaaaaa-cagaacttttacatccttcattcttataaccccttcaactac |
11277 |
T |
|
| Q |
307 |
tattttttaaaaacattgattatttgttataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11276 |
tattttttaaaaacattgattatttgttataatatttacaccatcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttaca |
11177 |
T |
|
| Q |
407 |
ttttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaat------------ctcattccttttcttctcattctgtaatat |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| |
|
|
| T |
11176 |
ttttagctcatccatatttccctttttccctttcacctatatgataacaaatattccttttccttttctgctcattccttttctgctcattctgtaatat |
11077 |
T |
|
| Q |
495 |
ttgatgatcaattttatcatttccctcannnnnnnncttgacttttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11076 |
ttgatgatcaattttatcatttacctca--ttttttctt-acttttccaccatgtctactattgatgtcaataacaccaaac |
10998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 10995 - 10958
Alignment:
| Q |
539 |
ttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995 |
ttccaccatgtctactattgatgtcaataacaccaaac |
10958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 268 - 576
Target Start/End: Original strand, 43942417 - 43942725
Alignment:
| Q |
268 |
aacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata--atatttacaccatcacaattgaatttgt |
365 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
43942417 |
aacttttacatccttcattcttataactccttcaactactattttttaaaaacattgattatttgttatataatatttacaccatcaccattgaatttgt |
43942516 |
T |
|
| Q |
366 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
465 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43942517 |
ctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctacatgataaccaacgcaaatc |
43942616 |
T |
|
| Q |
466 |
tcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctcannnnnnnncttgacttttccaccatgtctactattgatgtcaa |
565 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942617 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctca--ttttttcttgacttttccaccatgtctactattgatgtcaa |
43942714 |
T |
|
| Q |
566 |
taacaccaaac |
576 |
Q |
| |
|
||||||||||| |
|
|
| T |
43942715 |
taacaccaaac |
43942725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 43942139 - 43942372
Alignment:
| Q |
19 |
tattccaagctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactcctt |
118 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
43942139 |
tattctaatctacattttgcttacatgtcacttcaccaatgatcccctttctaatttttattcttgatcattcttctactctgcttatgtgtcactccct |
43942238 |
T |
|
| Q |
119 |
caaaccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaagtaaatgaataggaatatatacatcaatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
43942239 |
caaaccattatacataataattttgataaaaagagttacactaatcaattgcaaccttaataagaaagaactaattgaataggaatatacacatcaatgt |
43942338 |
T |
|
| Q |
219 |
taaccaaatgtaactgaacattattattttaatt |
252 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
43942339 |
taaccaagtgtaactgaacattattattttaatt |
43942372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 334 - 522
Target Start/End: Complemental strand, 2501361 - 2501174
Alignment:
| Q |
334 |
tataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttcccttttt |
433 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
2501361 |
tataatatttacaccatcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttccttttt |
2501262 |
T |
|
| Q |
434 |
ccctttcacctatatgataaccaacgcaaatctcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctca |
522 |
Q |
| |
|
||||||||||||||| |||| | || | ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
2501261 |
ccctttcacctatataataatc-acactaatctcattccttttctgctcattctgtaacatttcatgatcaattttatcatttacctca |
2501174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 2501804 - 2501722
Alignment:
| Q |
85 |
atcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaagagttacactaatcaattgc |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2501804 |
atcattcttctactttgcttatgtgtcactccctcaaaccattataca---taattttgataaaaagagttacactaatctattgc |
2501722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 7382 - 7545
Alignment:
| Q |
25 |
aagctacattttgcttacatgtcacttcactaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaaacc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7382 |
aagctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagcc |
7481 |
T |
|
| Q |
125 |
attatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7482 |
attatacataatacttttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa |
7545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 7542 - 7610
Alignment:
| Q |
266 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7542 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
7610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 431 - 576
Target Start/End: Complemental strand, 26231004 - 26230861
Alignment:
| Q |
431 |
tttccctttcacctatatgataaccaacgcaaatctcattccttttcttctcattctgtaatatttgatgatcaattttatcatttccctcannnnnnnn |
530 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||||||||||| | |||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
26231004 |
tttccctttcacctatataataaccaacactaatctcattccttttatgatcattctgtaatatttgatgatgaagtttatcatttacctca--ttctct |
26230907 |
T |
|
| Q |
531 |
cttgacttttccaccatgtctactattgatgtcaataacaccaaac |
576 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
26230906 |
cttgacttttccactatgtctactgttgatgtcaataacaccaaac |
26230861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 417
Target Start/End: Complemental strand, 26231132 - 26231049
Alignment:
| Q |
334 |
tataatatttacaccatcacaattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcat |
417 |
Q |
| |
|
|||| |||||||||||||| |||| || ||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
26231132 |
tatattatttacaccatcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacattttagatcat |
26231049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1521 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1521
Description:
Target: scaffold1521; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 183 - 236
Alignment:
| Q |
74 |
ttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt |
127 |
Q |
| |
|
||||| |||| | |||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
183 |
ttttaatcttaagcattctcctactttgcttatgtgtctctccctcaaaccatt |
236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 30536 - 30483
Alignment:
| Q |
74 |
ttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt |
127 |
Q |
| |
|
||||| |||| | |||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
30536 |
ttttaatcttaagcattctcctactttgcttatgtgtctctccctcaaaccatt |
30483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 31327 - 31274
Alignment:
| Q |
74 |
ttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt |
127 |
Q |
| |
|
||||| |||| | |||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
31327 |
ttttaatcttaagcattctcctactttgcttatgtgtctctccctcaaaccatt |
31274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 10183058 - 10183111
Alignment:
| Q |
74 |
ttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt |
127 |
Q |
| |
|
||||| |||| | |||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
10183058 |
ttttaatcttaagcattctcctactttgcttatgtgtctctccctcaaaccatt |
10183111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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