View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_low_10 (Length: 241)
Name: NF8208_low_10
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_low_10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 45075828 - 45076050
Alignment:
| Q |
19 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
118 |
Q |
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| T |
45075828 |
caattgtcccattgttaccttatgaacaaaattcaatagatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
45075927 |
T |
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| Q |
119 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
218 |
Q |
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| T |
45075928 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
45076027 |
T |
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| Q |
219 |
cagggaattgaggccattctgat |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
45076028 |
cagggaattgaggccattctgat |
45076050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 45083258 - 45083473
Alignment:
| Q |
19 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
118 |
Q |
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| T |
45083258 |
caattgtcccattgttaccttatgtagaaaattcaatagatcaaattttaatataacattaacacattttaataatggcttagctattactttatctaaa |
45083357 |
T |
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| Q |
119 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
218 |
Q |
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| T |
45083358 |
tagttaccagtaataataacatcaatgaggttagttccaaaaatgagactgctaaaccttccaccaggcttttctcttcctcttccataagatggtaaag |
45083457 |
T |
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| Q |
219 |
cagggaattgaggcca |
234 |
Q |
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| T |
45083458 |
caggaagttgaggcca |
45083473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 45068211 - 45068425
Alignment:
| Q |
19 |
caattgtcccattgttaccttatgaacaaaattcaattgatcaaattttaatataagcttgacaaattttaataatggcatagctatcaatttatctaaa |
118 |
Q |
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| T |
45068211 |
caattgtcccattgttaccttatgtagaaaattcaatagatcaaattttaattgaagtttgataaattttaata--------gctattaatttatgcaaa |
45068302 |
T |
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| Q |
119 |
tagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaa |
218 |
Q |
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| T |
45068303 |
tagttaccggtaattacaacatcagtgaggttagttccaaaaatgagactactaaaccttccatcaggtgcatctttttctcttccataagatggtaaaa |
45068402 |
T |
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| Q |
219 |
cagggaattgaggccattctgat |
241 |
Q |
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| T |
45068403 |
aagataatttaggccattctgat |
45068425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 45079037 - 45079161
Alignment:
| Q |
117 |
aatagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaa |
216 |
Q |
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|||| ||||| ||||| || || |||||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||| ||||| |
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| T |
45079037 |
aataattaccggtaataatcacgtcagtgaggttagttccaaaaatgagactactaaaccttccagcaggtgcatctcttccccttccataagatggtaa |
45079136 |
T |
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| Q |
217 |
aacagggaattgaggccattctgat |
241 |
Q |
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| T |
45079137 |
aacaagaagttgaggccattctgat |
45079161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 34505733 - 34505833
Alignment:
| Q |
117 |
aatagttaccagtaattataacatcagtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaa |
216 |
Q |
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|||| ||||| ||||||||||| || ||||||| |||||| |||| |||||| ||||||||| | ||| ||||| ||||| ||||||||||| ||||| |
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| T |
34505733 |
aataattaccggtaattataacgtcggtgaggtgagttccgaaaatgagactactaaaccttggaccaggtgcatctcttccccttccataagatggtaa |
34505832 |
T |
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| Q |
217 |
a |
217 |
Q |
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| T |
34505833 |
a |
34505833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 41333221 - 41333176
Alignment:
| Q |
136 |
aacatcagtgaggttagttccaaaaacgagactgctaaaccttcca |
181 |
Q |
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| T |
41333221 |
aacatcagtgaggttggttccaaaaattagactgctataccttcca |
41333176 |
T |
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