View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_low_4 (Length: 324)
Name: NF8208_low_4
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1831540 - 1831845
Alignment:
| Q |
1 |
ggtaatgatatgatatttatatgtctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaaatttcaaaagacaaatgatgaga |
100 |
Q |
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||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| | |
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| T |
1831540 |
ggtaatgatctgatacttatctgtctatatgttaatgacttagtgttaactggaagcaacataacatagacagaaaaatt-caaaagacaaatgatgaca |
1831638 |
T |
|
| Q |
101 |
gaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgcta |
200 |
Q |
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| T |
1831639 |
gaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgtttagtgatgcaccagaagaaatatgcta |
1831738 |
T |
|
| Q |
201 |
caaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-accttaggtgtgtaaagaatgaagataaggagctagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||| | |||||||| |
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| T |
1831739 |
caaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagt |
1831838 |
T |
|
| Q |
300 |
tgaccct |
306 |
Q |
| |
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||||||| |
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| T |
1831839 |
tgaccct |
1831845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 15490654 - 15490418
Alignment:
| Q |
17 |
ttatatgtctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaaatttcaaaagacaaatgatgagagaatttgagatggaag |
116 |
Q |
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|||| |||||||||||| |||| || ||||||||||||| ||| ||| ||| |||| || |||| |||||||||||||||||||||||| |||| | |
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| T |
15490654 |
ttatttgtctatatgttgatgatttcgtggtaactggaaccaatataattgagaaagaagaa-ttcataagacaaatgatgagagaatttgatatggctg |
15490556 |
T |
|
| Q |
117 |
atttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaag--aaatatgctacaaatattttaaag |
214 |
Q |
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| T |
15490555 |
atttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttagggatgcatcagaagataaacatgttattgatattcttaag |
15490456 |
T |
|
| Q |
215 |
agattcaacatgatgggcttcaatcctgcatctacacc |
252 |
Q |
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| T |
15490455 |
agattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 16944280 - 16944109
Alignment:
| Q |
24 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
122 |
Q |
| |
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|||||||||| || | |||||||||||| ||||||| |||| |||||| | || | ||||||||||||||||||| |||||| || ||| |||||| |
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| T |
16944280 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
16944181 |
T |
|
| Q |
123 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
194 |
Q |
| |
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|
| T |
16944180 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
16944109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 17014945 - 17014774
Alignment:
| Q |
24 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
122 |
Q |
| |
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|||||||||| || | |||||||||||| ||||||| |||| |||||| | || | ||||||||||||||||||| |||||| || ||| |||||| |
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| T |
17014945 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
17014846 |
T |
|
| Q |
123 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
194 |
Q |
| |
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|||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||||||||||| |
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| T |
17014845 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
17014774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
80 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
179 |
Q |
| |
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||||||||||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |
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| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
|
| Q |
180 |
tgcaccagaagaaatatgctacaaatattttaaagagattcaa |
222 |
Q |
| |
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||||| ||||||||||||| | | ||||||| ||||||||||| |
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|
| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
122 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
221 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
|
| Q |
222 |
acatgatgggcttcaatcctgcatctacac |
251 |
Q |
| |
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||||| || || ||||||||||||||||| |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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