View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208_low_5 (Length: 314)
Name: NF8208_low_5
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 40635360 - 40635083
Alignment:
| Q |
17 |
ctctgcttaattaatttgtttatcttttggttttggttttccaaatgattaaggaactactcttcatgcttccaaccctcctttttgaattttatttgca |
116 |
Q |
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| T |
40635360 |
ctctgcttaattaatttgtttatcttttggttttcgttttccaaatgattaaggaactactcttcatgcttccaaccctcctttttgaattttatttgca |
40635261 |
T |
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| Q |
117 |
cacacttttttgtatgataataaaccataaggaaatactttggaatatgaagaagttaggaagaagaggacaaaacgtgtatgtcctcctaattattaat |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635260 |
cacacttttttgtatgataat-aaccataaggaaatactttggaatatgaagaagttaggaagaagaggacaaaacgtgtatgtcctcctaattattaat |
40635162 |
T |
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| Q |
217 |
atcaacatagtccaaaatatcaaagttaagtactttctcttgtctcgtagaagatgacaaaaataaaattatacgagtat |
296 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635161 |
atcaacatagtccaaaa-atcaaagtaaagtactttctcttgtctcgtagaagatgacaaaaataaaattatacgagtat |
40635083 |
T |
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