View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208_low_6 (Length: 302)
Name: NF8208_low_6
Description: NF8208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 45076051 - 45076339
Alignment:
| Q |
1 |
tcatcctgactcatataaaagtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtccttttgtataatgattatatatacctgaga |
100 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45076051 |
tcatcctgaatcatataaacgtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtccttttgtataatgattatatatacctgaga |
45076150 |
T |
|
| Q |
101 |
tgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaataagttgtgca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45076151 |
tgcaagaatgacagaatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaataagttgtgca |
45076250 |
T |
|
| Q |
201 |
ccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45076251 |
ccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaa |
45076339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 45083549 - 45083754
Alignment:
| Q |
84 |
attatatatacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtg |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45083549 |
attatatatacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttagccatttacctggtg |
45083648 |
T |
|
| Q |
184 |
gaacaataagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacacc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45083649 |
gaacaataagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacacc |
45083748 |
T |
|
| Q |
284 |
accaaa |
289 |
Q |
| |
|
|||||| |
|
|
| T |
45083749 |
accaaa |
45083754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 45068503 - 45068702
Alignment:
| Q |
90 |
tatacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45068503 |
tatacctgagatgcaagaatgacagcacccttttggagaaaaagagtgaaatggcttgtgagattgaagcttcctgttagccatttacctggtggaacaa |
45068602 |
T |
|
| Q |
190 |
taagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
45068603 |
taagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggttttgccgtcaccaacagcaccaaa |
45068702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 45079261 - 45079463
Alignment:
| Q |
87 |
atatatacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaa |
186 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45079261 |
atatatacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaa |
45079360 |
T |
|
| Q |
187 |
caataagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccacc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
45079361 |
caataagttgtgcaccaccatcatttgcatattggctaaggttggttattgctgcattaaaagcttttgtgttaagggttttgccatcaccaacagcacc |
45079460 |
T |
|
| Q |
287 |
aaa |
289 |
Q |
| |
|
||| |
|
|
| T |
45079461 |
aaa |
45079463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45068426 - 45068495
Alignment:
| Q |
1 |
tcatcctgactcatataaaagtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtc |
70 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||| | |||| |||||| | ||||||||||||| |
|
|
| T |
45068426 |
tcatcctgtatcatataaatgaccctttaattgattataaaattttaaaaaatactacaaaacaaaagtc |
45068495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 91 - 289
Target Start/End: Original strand, 34505937 - 34506135
Alignment:
| Q |
91 |
atacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaat |
190 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
34505937 |
atacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaacaat |
34506036 |
T |
|
| Q |
191 |
aagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34506037 |
aagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaa |
34506135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 41333000 - 41332905
Alignment:
| Q |
93 |
acctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaaca |
188 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || || | ||||||||| || |||||||||||||| || || | |||| | |||||||||||| |
|
|
| T |
41333000 |
acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca |
41332905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University