View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_high_4 (Length: 417)
Name: NF8209_high_4
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 402
Target Start/End: Complemental strand, 38482150 - 38481752
Alignment:
| Q |
5 |
gcagaatgaaatacttgccacctnnnnnnntatcagttcatgcgtttcaaacagaatctctttcttggtgtctgtcttagaggtatttttcaaagttgac |
104 |
Q |
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| T |
38482150 |
gcagaatggaagacttgccacctaaaaaaatatcagttcatgagtttcaaacagattctctttctttgagtctgtcttaggtgtatttttcatagttgaa |
38482051 |
T |
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| Q |
105 |
gtg----tttttgtactctatgaagccatgtaaaagtgtgggaattgaaaaggaatatagttggcgtttgttgcacgtgacttgttttcctccaattcac |
200 |
Q |
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| T |
38482050 |
gggcatctttttgtactctttgaagccatgcaaaagtgtgggaattggaaaggattatagttggagtttgtg---cgtgacttgttttcttccaattcac |
38481954 |
T |
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| Q |
201 |
ttgaaggattgattgtattgtggatgagttatcgacggtatgaggaaggaatgaaattgttgatatgagcaatcaagtgacaacttttcatcccacattc |
300 |
Q |
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| T |
38481953 |
ttgaaggattgattgtattgtggatgagttatcgatggtatgaggaaggaatggaattgttgatatgagcaatcaagtgacaactattcatcccacatcg |
38481854 |
T |
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| Q |
301 |
gggagaattggtggaaccgtgaggggaagtggttataaattgaaagtatatgatattatacaacgtgcatagttggatggatttgtgtaaggagtatcta |
400 |
Q |
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| T |
38481853 |
gggagaattggtgaaaccgtgaggggaagtggttataaattgaaagtatatgatattatacaacgtgcatacttggatggatttgtgtgaggagtatcta |
38481754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 51274466 - 51274554
Alignment:
| Q |
106 |
tgtttttgtactctatgaagccatgtaaaagtgtgggaattgaaa-aggaatatagttggcgtttgttgcacgtgacttgttttcctcc |
193 |
Q |
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| T |
51274466 |
tgtttttgtactcttcgatgctttgtgaaggtgtgggaattggaacaggattatagttggagtttgttgcacgtgacttgttttcctcc |
51274554 |
T |
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