View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8209_high_9 (Length: 312)

Name: NF8209_high_9
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8209_high_9
NF8209_high_9
[»] chr1 (20 HSPs)
chr1 (17-231)||(31026064-31026278)
chr1 (246-303)||(5694449-5694507)
chr1 (246-303)||(47010121-47010179)
chr1 (246-303)||(18043290-18043348)
chr1 (246-303)||(29657899-29657957)
chr1 (246-303)||(8472914-8472972)
chr1 (246-295)||(29210530-29210580)
chr1 (246-303)||(30294381-30294439)
chr1 (246-303)||(42769990-42770048)
chr1 (246-303)||(43286850-43286910)
chr1 (246-303)||(51065748-51065806)
chr1 (247-303)||(13961339-13961396)
chr1 (247-303)||(38162978-38163035)
chr1 (246-290)||(14350279-14350323)
chr1 (246-295)||(3784713-3784763)
chr1 (246-303)||(9266728-9266786)
chr1 (246-303)||(12072062-12072120)
chr1 (246-303)||(15227867-15227925)
chr1 (269-303)||(50128196-50128230)
chr1 (246-294)||(24178463-24178512)
[»] chr4 (20 HSPs)
chr4 (246-303)||(12356372-12356430)
chr4 (246-303)||(43202384-43202441)
chr4 (246-303)||(16536176-16536234)
chr4 (248-303)||(54655879-54655934)
chr4 (246-303)||(5091612-5091668)
chr4 (246-303)||(50619214-50619271)
chr4 (246-303)||(7769066-7769124)
chr4 (246-295)||(16820988-16821038)
chr4 (246-303)||(36395227-36395285)
chr4 (246-303)||(31517294-31517351)
chr4 (246-303)||(43944635-43944692)
chr4 (246-303)||(4089270-4089328)
chr4 (246-303)||(4268822-4268880)
chr4 (246-303)||(6164221-6164279)
chr4 (246-295)||(29591325-29591375)
chr4 (246-303)||(53003956-53004014)
chr4 (246-295)||(54054665-54054715)
chr4 (246-295)||(54897444-54897494)
chr4 (251-295)||(46688229-46688274)
chr4 (246-301)||(55882812-55882868)
[»] chr8 (20 HSPs)
chr8 (246-303)||(27988500-27988557)
chr8 (246-303)||(28045802-28045859)
chr8 (246-303)||(7304518-7304576)
chr8 (246-304)||(43119344-43119402)
chr8 (246-303)||(16394061-16394119)
chr8 (249-303)||(28626896-28626950)
chr8 (246-303)||(34228810-34228868)
chr8 (246-303)||(24843280-24843337)
chr8 (246-303)||(13643139-13643197)
chr8 (246-303)||(13743564-13743622)
chr8 (246-303)||(16888544-16888602)
chr8 (246-303)||(20831553-20831611)
chr8 (251-303)||(9253907-9253960)
chr8 (246-303)||(168594-168652)
chr8 (246-303)||(2805260-2805318)
chr8 (246-295)||(9537824-9537874)
chr8 (246-295)||(10618134-10618184)
chr8 (246-303)||(11112767-11112825)
chr8 (252-282)||(37373212-37373242)
chr8 (247-295)||(30675574-30675623)
[»] chr5 (6 HSPs)
chr5 (246-303)||(35504241-35504298)
chr5 (246-303)||(34650833-34650891)
chr5 (246-303)||(35132649-35132707)
chr5 (246-303)||(13661936-13661994)
chr5 (246-303)||(8787467-8787525)
chr5 (246-303)||(11957967-11958025)
[»] chr6 (12 HSPs)
chr6 (246-303)||(392224-392282)
chr6 (246-303)||(32929508-32929566)
chr6 (246-303)||(35044017-35044074)
chr6 (250-303)||(3026013-3026067)
chr6 (246-303)||(32985193-32985251)
chr6 (246-303)||(13416960-13417017)
chr6 (246-303)||(1391178-1391236)
chr6 (246-295)||(4215831-4215881)
chr6 (246-295)||(12145117-12145167)
chr6 (252-282)||(20969477-20969507)
chr6 (246-295)||(20898065-20898114)
chr6 (246-291)||(31280456-31280501)
[»] chr2 (21 HSPs)
chr2 (246-303)||(34442533-34442590)
chr2 (246-303)||(20553059-20553117)
chr2 (246-303)||(22567730-22567788)
chr2 (246-303)||(22887878-22887936)
chr2 (246-303)||(30486338-30486396)
chr2 (246-295)||(26891683-26891732)
chr2 (246-303)||(35851750-35851809)
chr2 (246-303)||(22068320-22068378)
chr2 (246-303)||(28601094-28601152)
chr2 (246-303)||(31390140-31390198)
chr2 (246-303)||(31438774-31438832)
chr2 (246-303)||(32360869-32360927)
chr2 (247-303)||(2898199-2898256)
chr2 (264-303)||(32860229-32860268)
chr2 (252-282)||(3668262-3668292)
chr2 (246-303)||(26387064-26387122)
chr2 (246-295)||(27856396-27856446)
chr2 (246-303)||(44588030-44588088)
chr2 (247-295)||(4022480-4022529)
chr2 (248-303)||(561520-561576)
chr2 (247-303)||(27584866-27584922)
[»] chr7 (12 HSPs)
chr7 (246-303)||(24438605-24438663)
chr7 (246-303)||(12218437-12218494)
chr7 (246-294)||(37674106-37674153)
chr7 (246-303)||(29993487-29993545)
chr7 (246-303)||(42044294-42044351)
chr7 (247-303)||(11686324-11686380)
chr7 (246-303)||(4628694-4628752)
chr7 (246-303)||(13064876-13064934)
chr7 (246-303)||(24798403-24798461)
chr7 (252-282)||(28587916-28587946)
chr7 (247-303)||(5729474-5729531)
chr7 (271-303)||(43594062-43594094)
[»] chr3 (16 HSPs)
chr3 (246-303)||(43786999-43787057)
chr3 (246-303)||(52520809-52520867)
chr3 (246-303)||(52552601-52552658)
chr3 (246-303)||(4168311-4168369)
chr3 (246-303)||(10617284-10617342)
chr3 (249-303)||(20924120-20924173)
chr3 (246-303)||(39074546-39074604)
chr3 (246-303)||(40362580-40362638)
chr3 (246-303)||(272348-272406)
chr3 (246-303)||(6842747-6842805)
chr3 (246-303)||(42964249-42964307)
chr3 (246-303)||(43269739-43269797)
chr3 (246-303)||(46352762-46352820)
chr3 (246-303)||(49893459-49893517)
chr3 (246-295)||(7468546-7468595)
chr3 (247-295)||(49529269-49529316)
[»] scaffold0045 (1 HSPs)
scaffold0045 (247-303)||(53358-53415)
[»] scaffold1152 (1 HSPs)
scaffold1152 (246-304)||(805-863)
[»] scaffold0425 (1 HSPs)
scaffold0425 (246-303)||(10838-10896)
[»] scaffold0206 (1 HSPs)
scaffold0206 (246-294)||(10990-11038)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 31026278 - 31026064
Alignment:
Q  17 acattatactttcacttcttgaatgatgcttaaattacactaaactctcccataccttataacatacattcttctcctttcttgtgaaaatatatattag 116  Q
    |||||||||||||| |||||||||||||||||||||| |  |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31026278 acattatactttcagttcttgaatgatgcttaaatta-ataaaactctcccatacgttatgacatacattcttctcctttcttgtgaaaatatatattag 31026180  T
Q  117 gaaaaaa-taaataaagagatatgttacatactgcaaaaagggacttcgtgaacaattcatgaatttgtcggtaaattaatgaccattagatttcatagt 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  31026179 gaaaaaaataaataaagagatatgttacatactgcaaaaagggacttcgtgaacaactcatgaatttgttggtaaattaatggccattagatttcatagt 31026080  T
Q  216 tatttgtcttcttcat 231  Q
    ||||||||||||||||    
T  31026079 tatttgtcttcttcat 31026064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 5694507 - 5694449
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  5694507 gggtcctgctaaccggtgcccccggagcactggttaagcataccataaaagggaattat 5694449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 47010179 - 47010121
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  47010179 gggtcctgctaaccggtgcccctggagcactggttaagcataccataaaagagaattat 47010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 18043348 - 18043290
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  18043348 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattat 18043290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 29657957 - 29657899
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  29657957 gggtcctgctaaccggtgcccccagggcactggttaagcataccataaaagggaattat 29657899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 8472914 - 8472972
Alignment:
Q  246 gggtcctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||  || ||| |||||||||||| ||||||||||||||||||||    
T  8472914 gggtcctgctaaccggtatcctcgggacactggttaagtataccataaaagagaattat 8472972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 29210580 - 29210530
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  29210580 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaag 29210530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 30294381 - 30294439
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||    
T  30294381 gggtcctgctaaccggtgtccccggagcacaggttaagcataccataaaagggaattat 30294439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 42769990 - 42770048
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||| ||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||    
T  42769990 gggttctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattat 42770048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 43286910 - 43286850
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga---cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||| |||||||| |   ||||||||||| ||||||||||||||||||||    
T  43286910 gggtcctgctaaccgatgcccccgaagcacactggttaagcataccataaaagagaattat 43286850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 51065748 - 51065806
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||| ||  ||||||||||| |||||||||||| |||||||    
T  51065748 gggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaattat 51065806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 13961396 - 13961339
Alignment:
Q  247 ggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||  ||| ||||||||||| ||||||||||||| ||||||    
T  13961396 ggtcctgctaaccggtgcccttggagcactggttaagcataccataaaagaaaattat 13961339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 38163035 - 38162978
Alignment:
Q  247 ggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||| || ||| ||||||| |||||||||||| |||||||    
T  38163035 ggtcctgctaaccggtgcccccggggcacgggttaagcataccataaaagggaattat 38162978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 14350279 - 14350323
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccat 290  Q
    |||||||||||||||||||||| || ||||||||||| |||||||    
T  14350279 gggtcctgctaaccggtgccccggggcactggttaagcataccat 14350323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 3784713 - 3784763
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    |||||| |||||||||||||||| |||||| ||||||| ||||||||||||    
T  3784713 gggtccggctaaccggtgcccccgggacacgggttaagcataccataaaag 3784763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 9266728 - 9266786
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||  | ||| ||||||||||| |||||||||||| |||||||    
T  9266728 gggtcctgctaaccggtgcttctggagcactggttaagtataccataaaagcgaattat 9266786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 12072062 - 12072120
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||||||  |||||||    
T  12072062 gggtgctgctaaccggtgcccccggggcactggttaagcataccataaaaaggaattat 12072120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 15227925 - 15227867
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||| |||||||||||||| ||||  ||||||||||| |||||||||||| |||||||    
T  15227925 gggtcttgctaaccggtgcctccggggcactggttaagcataccataaaagggaattat 15227867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 50128196 - 50128230
Alignment:
Q  269 ggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||| ||||||||||||||||||||    
T  50128196 ggacactggttaagcataccataaaagagaattat 50128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 24178463 - 24178512
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaa 294  Q
    |||||| |||||||||||||||| || ||||||||||| |||||||||||    
T  24178463 gggtccggctaaccggtgcccccggggcactggttaagcataccataaaa 24178512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 12356430 - 12356372
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12356430 gggtcctgctaaccggtgcccccggaacactggttaagcataccataaaagagaattat 12356372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 43202384 - 43202441
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  43202384 gggtcctgctaaccggtgcccccgggcactggttaagcttaccataaaagagaattat 43202441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 16536234 - 16536176
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  16536234 gggtcctgctaaccggtgcccccggggcactggttaagaataccataaaatagaattat 16536176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 54655879 - 54655934
Alignment:
Q  248 gtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||    
T  54655879 gtcctgctaaccggtgccccgggacactggttaagcatatcataagagagaattat 54655934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 5091612 - 5091668
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||    
T  5091612 gggtcctgctaaccggtgctcccggacactggttaagcata-cataaaagggaattat 5091668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 50619271 - 50619214
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||| ||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  50619271 gggtcccgctaaccggtgcccctgggcactggttaagcataccataaaagggaattat 50619214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 7769124 - 7769066
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||| ||||||| || |||||||||||||||||    
T  7769124 gggtcctgctaaccggtgcccccggggcacgggttaagtatgccataaaagagaattat 7769066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 16821038 - 16820988
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  16821038 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaag 16820988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 36395285 - 36395227
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||||||| |||||||    
T  36395285 gggtcctgctaactggtgcccccagggcactggttaagcataccataaaagggaattat 36395227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 31517351 - 31517294
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||| |||| |||||||||| | ||||||||||| |||||||| |||||||||||    
T  31517351 gggtccttctaatcggtgcccccaggcactggttaagcataccatataagagaattat 31517294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 43944692 - 43944635
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||| ||| |||||||    
T  43944692 gggtcttgctaaccggtgccctcgggcactggttaagcataccatacaagggaattat 43944635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 4089328 - 4089270
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||| |||||||| ||  ||||||||||  ||||||||||||||||||||    
T  4089328 gggtcctgctaactggtgcccctggggcactggttaaacataccataaaagagaattat 4089270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 4268822 - 4268880
Alignment:
Q  246 gggtcctgctaaccggtgccc-ccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||| | || ||||||||||  |||||||||||| |||||||    
T  4268822 gggtcctgctaaccggtgccctcggggcactggttaatcataccataaaagggaattat 4268880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 6164279 - 6164221
Alignment:
Q  246 gggtcctgctaaccggtgcccccggac-actggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| || |||   |||||||||| ||||||||||||||||||||    
T  6164279 gggtcctgctaaccggtgtcctcggggtactggttaagcataccataaaagagaattat 6164221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 29591375 - 29591325
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||||||||    
T  29591375 gggtcctgctaaccggtgcccccggggcactagttaagcataccataaaag 29591325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 53003956 - 53004014
Alignment:
Q  246 gggtcctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||| || |||||| ||||| ||| ||||||||||||||||    
T  53003956 gggtcctgctaaccggtgtcccggggacactgattaagcatatcataaaagagaattat 53004014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 54054715 - 54054665
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||| ||||||||||||| || ||||||||||| ||||||||||||    
T  54054715 gggtcctgccaaccggtgcccccggggcactggttaagcataccataaaag 54054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 54897494 - 54897444
Alignment:
Q  246 gggtcctgctaaccggtgcc-cccggacactggttaagaataccataaaag 295  Q
    |||||||||||||||||||| || |||||||||||||  ||||||||||||    
T  54897494 gggtcctgctaaccggtgcctccgggacactggttaaacataccataaaag 54897444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 46688229 - 46688274
Alignment:
Q  251 ctgctaaccggtgcccccgga-cactggttaagaataccataaaag 295  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||    
T  46688229 ctgctaaccggtgcccccagagcactggttaagcataccataaaag 46688274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 55882868 - 55882812
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaatt 301  Q
    ||||||| |||||||||||||||| | ||| ||||||| |||||||||||| |||||    
T  55882868 gggtcctactaaccggtgcccccgaggcacgggttaagtataccataaaagtgaatt 55882812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 27988500 - 27988557
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  27988500 gggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaattat 27988557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 28045802 - 28045859
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  28045802 gggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaattat 28045859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 7304518 - 7304576
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  7304518 gggtcctactaaccggtgcccccggagcactggttaagcataccataaaagagaattat 7304576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 43119402 - 43119344
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattatc 304  Q
    |||||||||||||||||||||| || || |||||||| |||||||||||||||||||||    
T  43119402 gggtcctgctaaccggtgccccgggccattggttaagcataccataaaagagaattatc 43119344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 16394061 - 16394119
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||    
T  16394061 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaattat 16394119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 28626950 - 28626896
Alignment:
Q  249 tcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||    
T  28626950 tcctgctaaccggtgctcccggacactgattaagcataccataaaagggaattat 28626896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 34228868 - 34228810
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  34228868 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 34228810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 24843280 - 24843337
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| |||| | |||| ||||| ||||||||||||||||||||    
T  24843280 gggtcctgctaaccggtgctcccgaatactgattaagcataccataaaagagaattat 24843337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 13643197 - 13643139
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||  || ||||||||||| ||||||||||||||||||||    
T  13643197 gggtcctgctaaccggtgctcctagggcactggttaagcataccataaaagagaattat 13643139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 13743622 - 13743564
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||  || ||||||||||| ||||||||||||||||||||    
T  13743622 gggtcctgctaaccggtgctcctagggcactggttaagcataccataaaagagaattat 13743564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 16888544 - 16888602
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || || |||||||| |||||| |||||||||||||    
T  16888544 gggtcctgctaaccggtgcccccggggcattggttaagcataccacaaaagagaattat 16888602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 20831553 - 20831611
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||| ||| ||||| ||||| ||||||||||||||||||||    
T  20831553 gggtcctgctaaccggtgtcccgggagcactgattaagcataccataaaagagaattat 20831611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 9253907 - 9253960
Alignment:
Q  251 ctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||| || ||| |||||||| ||||||||||||||||||||    
T  9253907 ctgctaaccggtgcccctgggacattggttaagcataccataaaagagaattat 9253960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 168652 - 168594
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||  |||||||    
T  168652 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaatggaattat 168594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 2805260 - 2805318
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||| ||||||||||||| ||||  ||||||||||| |||||||||||| |||||||    
T  2805260 gggtccggctaaccggtgcctccggggcactggttaagcataccataaaagggaattat 2805318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 9537824 - 9537874
Alignment:
Q  246 gggtcctgctaaccggtgcccccgg-acactggttaagaataccataaaag 295  Q
    |||||||||||||||||| | |||| |||||||||||| ||||||||||||    
T  9537824 gggtcctgctaaccggtgtctccgggacactggttaagcataccataaaag 9537874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 10618184 - 10618134
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaag 295  Q
    |||||||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  10618184 gggtcctgctaaccggtgccccggagacacgggttaagcataccataaaag 10618134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 11112825 - 11112767
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||| |||||||| || ||| ||||||| |||||||||||| |||||||    
T  11112825 gggtcctgctaaccagtgcccccagggcacaggttaagcataccataaaagtgaattat 11112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 37373212 - 37373242
Alignment:
Q  252 tgctaaccggtgcccccggacactggttaag 282  Q
    |||||||||||||||||||||||||||||||    
T  37373212 tgctaaccggtgcccccggacactggttaag 37373242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 30675574 - 30675623
Alignment:
Q  247 ggtcctgctaaccggtg-cccccggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||| |||| || ||||||||||| ||||||||||||    
T  30675574 ggtcctgctaaccggtgtccccggggcactggttaagcataccataaaag 30675623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 35504241 - 35504298
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  35504241 gggtcctgctaaccggtgcccccggacacgggttaagcataccataaaagggaattat 35504298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 34650833 - 34650891
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  34650833 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 34650891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 35132707 - 35132649
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  35132707 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaattat 35132649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 13661994 - 13661936
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||| ||||  ||| ||||||| ||||||||||||||||||||    
T  13661994 gggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaagagaattat 13661936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 8787525 - 8787467
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||||||  |||||||    
T  8787525 gggtcctgctaaccggtgcccccggggcacaggttaagcataccataaaatggaattat 8787467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 11957967 - 11958025
Alignment:
Q  246 gggtcctgctaaccggtgcccc-cggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||  || ||||||||||| || ||||||||| |||||||    
T  11957967 gggtcctgctaaccggtgcccctggggcactggttaagcatgccataaaagggaattat 11958025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 392282 - 392224
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  392282 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagagaattat 392224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 32929508 - 32929566
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  32929508 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 32929566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 35044074 - 35044017
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||| || ||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  35044074 gggtcatgttaaccggtgccccggggcactggttaagcataccataaaagagaattat 35044017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 3026013 - 3026067
Alignment:
Q  250 cctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  3026013 cctgctaaccggtgccctcgggacactgattaagcataccataaaagagaattat 3026067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 32985193 - 32985251
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||| ||||||||||||||||||||  ||||||||||| |||||||||||| |||||||    
T  32985193 gggttctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 32985251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 13416960 - 13417017
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||| ||||||||||||| |||| ||||||||||| |||  |||||||||||||||    
T  13416960 gggtccagctaaccggtgcctccgggcactggttaagcatattataaaagagaattat 13417017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 1391178 - 1391236
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||  || ||| ||||||||||| |||||||||||| |||||||    
T  1391178 gggtcctgctaaccggtgttcctggaacactggttaagcataccataaaagggaattat 1391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 4215881 - 4215831
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  4215881 gggtcctgctaaccgatgcccccggggcactggttaagcataccataaaag 4215831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 12145117 - 12145167
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaag 295  Q
    |||||||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  12145117 gggtcctgctaaccggtgcctccggagcactggttaagcatactataaaag 12145167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Complemental strand, 20969507 - 20969477
Alignment:
Q  252 tgctaaccggtgcccccggacactggttaag 282  Q
    |||||||||||||||||||||||||||||||    
T  20969507 tgctaaccggtgcccccggacactggttaag 20969477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 20898114 - 20898065
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaag 295  Q
    |||||| ||||||||||||||| || ||| ||||||| ||||||||||||    
T  20898114 gggtccggctaaccggtgccccggggcacaggttaagcataccataaaag 20898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 31280501 - 31280456
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccata 291  Q
    |||||||||||||||||||| |||| |||| |||||| ||||||||    
T  31280501 gggtcctgctaaccggtgcctccgggcactcgttaagcataccata 31280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 34442533 - 34442590
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||    
T  34442533 gggtcctgctaaccgatgcccccgggcactggttaagcataccataaaagggaattat 34442590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 20553117 - 20553059
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  20553117 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 20553059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 22567788 - 22567730
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  22567788 gggtcctgctaaccggtgcccctggagcacgggttaagcataccataaaagagaattat 22567730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 22887936 - 22887878
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22887936 gggtcatgctaatcggtgcccccggagcactggttaagcataccataaaagagaattat 22887878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 30486396 - 30486338
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  30486396 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 30486338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 26891683 - 26891732
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  26891683 gggtcctgctaaccggtgcccccagacactagttaagcataccataaaag 26891732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 35851750 - 35851809
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga--cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| ||  || |||||||| ||||||||||||||||||||    
T  35851750 gggtcctgctaaccggtgccccccgaggcattggttaagcataccataaaagagaattat 35851809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 22068320 - 22068378
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||| ||||||||||||  ||||||||||| |||||||||||| |||||||    
T  22068320 gggtcctgctaatcggtgcccccggggcactggttaagcataccataaaagggaattat 22068378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 28601152 - 28601094
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||| |  ||||||||||| ||||||||||||||||||||    
T  28601152 gggtcctgctaaccggtgctcccagtgcactggttaagcataccataaaagagaattat 28601094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 31390198 - 31390140
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||| ||||||||||||| ||| ||||||| |||||||||||| |||||||    
T  31390198 gggtcctgctaatcggtgcccccggagcacgggttaagcataccataaaagggaattat 31390140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 31438832 - 31438774
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||||    
T  31438832 gggtcctgctaaccggtgtccccggggcactggttaagcataccataaaagggaattat 31438774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 32360869 - 32360927
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||| |||||||    
T  32360869 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagggaattat 32360927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 2898256 - 2898199
Alignment:
Q  247 ggtcctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| |||| |||||| ||||  ||||||||||||||||||||    
T  2898256 ggtcctgctaaccggtgcctccgggacactgattaaacataccataaaagagaattat 2898199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 32860268 - 32860229
Alignment:
Q  264 cccccggacactggttaagaataccataaaagagaattat 303  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  32860268 ccccgggacactggttaagcataccataaaagagaattat 32860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Complemental strand, 3668292 - 3668262
Alignment:
Q  252 tgctaaccggtgcccccggacactggttaag 282  Q
    |||||||||||||||||||||||||||||||    
T  3668292 tgctaaccggtgcccccggacactggttaag 3668262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 26387064 - 26387122
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaattat 303  Q
    |||||||| ||||||||||||||  | ||||||||||| |||||||||||| |||||||    
T  26387064 gggtcctgttaaccggtgcccccaaggcactggttaagcataccataaaagggaattat 26387122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 27856396 - 27856446
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  27856396 gggtcctgctaaccgatgcccccggggcactggttaagcataccataaaag 27856446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 44588088 - 44588030
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||| ||||| || |||| |||||| |||||||||||| |||||||    
T  44588088 gggtcctgctaaccggtacccccggggcacttgttaagcataccataaaagggaattat 44588030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 4022480 - 4022529
Alignment:
Q  247 ggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaag 295  Q
    |||||||||||||||||||||| |||||||||||||  ||| ||||||||    
T  4022480 ggtcctgctaaccggtgcccccgggacactggttaaacatatcataaaag 4022529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 561520 - 561576
Alignment:
Q  248 gtcctgctaaccggtgcccccggac-actggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||||   |||| ||||| ||||||||||||||||||||    
T  561520 gtcctgctaaccggtgcctccggggtactgattaagcataccataaaagagaattat 561576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 27584922 - 27584866
Alignment:
Q  247 ggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||| |||  |||| ||||||||||| ||||||| || |||||||||    
T  27584922 ggtcctgctaaccgctgcttccgggcactggttaagtataccatgaatgagaattat 27584866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 24438663 - 24438605
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  24438663 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattat 24438605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 12218437 - 12218494
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||| || ||||||||||  ||||||||||||||||||||    
T  12218437 gggtcctgctaaccggtgtcccggggcactggttaaacataccataaaagagaattat 12218494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 37674106 - 37674153
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaa 294  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  37674106 gggtcctgctaaccggtgcccc-ggacactggttaagcataccataaaa 37674153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 29993487 - 29993545
Alignment:
Q  246 gggtcctgctaaccggtgcccccgg-acactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||    
T  29993487 gggtcctgctaaccgatgcctccgggacactggttaagcataccataaaagggaattat 29993545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 42044294 - 42044351
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||| |||||||||||||||| || ||||||||||  |||||||||||| |||||||    
T  42044294 gggtcatgctaaccggtgccccggggcactggttaaacataccataaaagggaattat 42044351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 11686324 - 11686380
Alignment:
Q  247 ggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||||  || ||||||| ||| ||||||||||||||||    
T  11686324 ggtcctgctaaccggtgcctccgggtacaggttaagcatatcataaaagagaattat 11686380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 4628752 - 4628694
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||   | ||||||||||| |||||||||||| |||||||    
T  4628752 gggtcctgctaaccggtgcccctaaggcactggttaagcataccataaaagggaattat 4628694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 13064876 - 13064934
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||| |||||||||||||||||  || ||||||||||| |||||||||||| |||||||    
T  13064876 gggttctgctaaccggtgcccctagagcactggttaagcataccataaaagggaattat 13064934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 24798403 - 24798461
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||| ||||||||| || ||||||||||| |||| ||||||| |||||||    
T  24798403 gggtcctgctaactggtgcccccggggcactggttaagcatactataaaagggaattat 24798461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 28587916 - 28587946
Alignment:
Q  252 tgctaaccggtgcccccggacactggttaag 282  Q
    |||||||||||||||||||||||||||||||    
T  28587916 tgctaaccggtgcccccggacactggttaag 28587946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 5729531 - 5729474
Alignment:
Q  247 ggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||| ||||| ||| | ||||||||||| || |||||||||||||||||    
T  5729531 ggtcctgctaacctgtgcctccgaggcactggttaagcatgccataaaagagaattat 5729474  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 43594062 - 43594094
Alignment:
Q  271 acactggttaagaataccataaaagagaattat 303  Q
    |||||||||||| ||||||||||||||||||||    
T  43594062 acactggttaagcataccataaaagagaattat 43594094  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 43787057 - 43786999
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  43787057 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattat 43786999  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 52520867 - 52520809
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  52520867 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattat 52520809  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 52552658 - 52552601
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    ||||| ||||||||| || |||||||||||||||||  ||||||||||||||||||||    
T  52552658 gggtcatgctaaccgatgtccccggacactggttaaatataccataaaagagaattat 52552601  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 4168369 - 4168311
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| ||  || ||||||| ||||||||||||||||||||    
T  4168369 gggtcctgctaaccggtgcccccggggtacgggttaagcataccataaaagagaattat 4168311  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 10617284 - 10617342
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||||||| |||||||    
T  10617284 gggtcctgctaaccggtgcccccggggcacgggttaagcataccataaaagggaattat 10617342  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 20924173 - 20924120
Alignment:
Q  249 tcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||| |  |||||||||||||| ||||||||||||||||||||    
T  20924173 tcctgctaaccggtgctca-ggacactggttaagtataccataaaagagaattat 20924120  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 39074604 - 39074546
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||||| ||  ||||||||||| |||||||||||| |||||||    
T  39074604 gggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaattat 39074546  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 40362580 - 40362638
Alignment:
Q  246 gggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    |||||||||||| |||| |||||||  ||||||||||| ||||||||||||||||||||    
T  40362580 gggtcctgctaatcggtacccccggggcactggttaagcataccataaaagagaattat 40362638  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 272406 - 272348
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||||||| || ||| | ||||| |||||||||||| |||||||    
T  272406 gggtcctgctaaccggtgcccccggggcaccgattaagcataccataaaagggaattat 272348  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 6842805 - 6842747
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||| ||||||| || ||||||||||| |||||||||| | |||||||    
T  6842805 gggtcctgctaaccgctgcccccggggcactggttaagcataccataaatgggaattat 6842747  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 42964249 - 42964307
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||| ||| | ||||||||||||| ||| |||||||| |||||||    
T  42964249 gggtcctgctaaccggtgtccctgagacactggttaagcatatcataaaagtgaattat 42964307  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 43269739 - 43269797
Alignment:
Q  246 gggtcctgctaaccggtgcc-cccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||| || || ||||||||||| |||||||||| || ||||||    
T  43269739 gggtcctgctaaccggtgcctccggggcactggttaagcataccataaaggataattat 43269797  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 46352820 - 46352762
Alignment:
Q  246 gggtcctgctaaccggtgcc-cccggacactggttaagaataccataaaagagaattat 303  Q
    |||||||||||||||||||| || || ||| ||||||| |||||||||||| |||||||    
T  46352820 gggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaagggaattat 46352762  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 49893517 - 49893459
Alignment:
Q  246 gggtcctgctaaccggtgccccc-ggacactggttaagaataccataaaagagaattat 303  Q
    |||||| |||||||||||||||| || ||||| ||||| |||||||||||| |||||||    
T  49893517 gggtccggctaaccggtgcccccggggcactgattaagcataccataaaagggaattat 49893459  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 7468595 - 7468546
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaag 295  Q
    ||||||||||||||||||| || || ||||| ||||| ||||||||||||    
T  7468595 gggtcctgctaaccggtgctccggggcactgattaagcataccataaaag 7468546  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 49529269 - 49529316
Alignment:
Q  247 ggtcctgctaaccggtgcccccggacactggttaagaataccataaaag 295  Q
    |||| ||||||||||||||||||| ||||||||||  ||||||||||||    
T  49529269 ggtcttgctaaccggtgcccccgg-cactggttaaacataccataaaag 49529316  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 53358 - 53415
Alignment:
Q  247 ggtcctgctaaccggtgcccccgga-cactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||||||| ||||  |||| |||||| ||||||||||||||||||||    
T  53358 ggtcctgctaaccggtgcctccggggcactagttaagcataccataaaagagaattat 53415  T

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Target: scaffold1152 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 863 - 805
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaagagaattatc 304  Q
    ||||||| |||||||||||||| ||  | | |||||| |||||||||||||||||||||    
T  863 gggtcctactaaccggtgccccgggctattagttaagcataccataaaagagaattatc 805  T

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Target: scaffold0425 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 10896 - 10838
Alignment:
Q  246 gggtcctgctaaccggtgcccccg-gacactggttaagaataccataaaagagaattat 303  Q
    ||||||||||||||| |||||||| | ||||||||||| |||||||||| | |||||||    
T  10896 gggtcctgctaaccgctgcccccgaggcactggttaagcataccataaatgggaattat 10838  T

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Target: scaffold0206 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 10990 - 11038
Alignment:
Q  246 gggtcctgctaaccggtgcccccggacactggttaagaataccataaaa 294  Q
    ||||||||||||| ||||||||||| |||  |||||| |||||||||||    
T  10990 gggtcctgctaactggtgcccccgggcaccagttaagcataccataaaa 11038  T

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