View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8209_low_1 (Length: 845)

Name: NF8209_low_1
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8209_low_1
NF8209_low_1
[»] chr5 (15 HSPs)
chr5 (1-529)||(29552367-29552893)
chr5 (595-828)||(29552014-29552247)
chr5 (453-523)||(6102876-6102946)
chr5 (458-523)||(12036308-12036373)
chr5 (452-523)||(16802075-16802146)
chr5 (454-522)||(15139166-15139234)
chr5 (447-504)||(35626655-35626712)
chr5 (453-523)||(3600158-3600228)
chr5 (244-406)||(35053903-35054065)
chr5 (244-406)||(35070215-35070377)
chr5 (451-525)||(35290683-35290757)
chr5 (465-523)||(39034458-39034516)
chr5 (459-523)||(2033502-2033566)
chr5 (451-505)||(35349387-35349441)
chr5 (454-515)||(6830324-6830385)
[»] chr3 (8 HSPs)
chr3 (196-412)||(25091516-25091732)
chr3 (615-775)||(25091233-25091393)
chr3 (3-71)||(25091821-25091889)
chr3 (449-523)||(41287874-41287948)
chr3 (449-523)||(34228249-34228323)
chr3 (449-523)||(48252262-48252336)
chr3 (453-525)||(45408664-45408735)
chr3 (453-522)||(19202180-19202249)
[»] chr2 (4 HSPs)
chr2 (453-523)||(1870489-1870559)
chr2 (454-523)||(13835884-13835953)
chr2 (453-523)||(5444487-5444557)
chr2 (478-523)||(33635561-33635606)
[»] chr4 (17 HSPs)
chr4 (454-523)||(4860165-4860234)
chr4 (453-523)||(51100021-51100091)
chr4 (250-434)||(4382455-4382639)
chr4 (454-523)||(45921335-45921404)
chr4 (453-523)||(2908206-2908276)
chr4 (453-523)||(16831096-16831166)
chr4 (453-519)||(40298023-40298089)
chr4 (453-521)||(9119291-9119359)
chr4 (451-523)||(28299283-28299355)
chr4 (452-523)||(53142829-53142900)
chr4 (456-519)||(55090832-55090895)
chr4 (465-523)||(48400926-48400984)
chr4 (450-523)||(14347115-14347187)
chr4 (465-523)||(32325072-32325130)
chr4 (468-522)||(37992901-37992955)
chr4 (451-505)||(53145195-53145249)
chr4 (449-506)||(34458791-34458848)
[»] scaffold0299 (1 HSPs)
scaffold0299 (451-523)||(18009-18081)
[»] chr7 (8 HSPs)
chr7 (451-523)||(8656343-8656415)
chr7 (453-523)||(24937879-24937949)
chr7 (450-523)||(39786444-39786517)
chr7 (460-523)||(47537473-47537536)
chr7 (453-523)||(1112147-1112217)
chr7 (473-523)||(21857615-21857665)
chr7 (453-506)||(28664542-28664595)
chr7 (453-515)||(27915189-27915251)
[»] chr6 (6 HSPs)
chr6 (451-523)||(32800253-32800325)
chr6 (452-523)||(20208007-20208078)
chr6 (452-523)||(22102030-22102101)
chr6 (453-523)||(28048736-28048806)
chr6 (454-523)||(2398056-2398125)
chr6 (456-523)||(6770882-6770949)
[»] chr1 (5 HSPs)
chr1 (453-523)||(11065862-11065932)
chr1 (453-523)||(31160774-31160844)
chr1 (451-523)||(27546-27618)
chr1 (453-523)||(39283718-39283788)
chr1 (451-519)||(48375293-48375361)
[»] chr8 (7 HSPs)
chr8 (454-523)||(27283339-27283407)
chr8 (458-523)||(10451947-10452012)
chr8 (453-521)||(4989745-4989813)
chr8 (453-523)||(40607346-40607416)
chr8 (451-523)||(12958923-12958995)
chr8 (451-523)||(34085199-34085271)
chr8 (473-523)||(18131239-18131289)
[»] scaffold0123 (1 HSPs)
scaffold0123 (458-523)||(17582-17647)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 29552893 - 29552367
Alignment:
Q  1 gggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaaggtttatgaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552893 gggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaaggtttatgaaccat 29552794  T
Q  101 gatccctataccatttnnnnnnnnnncactctatgaattgatgtatttattagcaaaaaatataaaggaaaaggtagaagaacaaactcaatatgataac 200  Q
    ||||||||||||||||           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29552793 gatccctataccatttaaaaaaaaa--actctatgaagtgatgtatttattagcaaaaaatataaaggaaaaggtagaagaactaactcaatatgataac 29552696  T
Q  201 ttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552695 ttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgca 29552596  T
Q  301 tgccaccaaagtgttcctctttgtcctgtgagggtaaaattgtacatatagacttgacctggttgaattgggcattgggttatgtatgctggcccatcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  29552595 tgccaccaaagtgttcctctttgtcctgtgagggtaaaattgtacatatagacctggcctggttgaattgggcattgggttatgtatgctggcccatcag 29552496  T
Q  401 cccaacctgttctcaactgtctgattccatgcctatcgatcaattttaaggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||     
T  29552495 cccaacctgttctcaactgtctgattccatgcctatcgatcaattttaagggcaatggttaaggaaactataaatagaaaatttgtttcgtaaatataaa 29552396  T
Q  501 ttttgacatttgattaagtaatattacac 529  Q
    |||||||||||||||||||||||||||||    
T  29552395 ttttgacatttgattaagtaatattacac 29552367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 595 - 828
Target Start/End: Complemental strand, 29552247 - 29552014
Alignment:
Q  595 gaagtaatgaattgtagcacactcaccaatggatgctaacattgtatttgacatggttaaccaccttaacaagaacagtatcatcttctctagcatagat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552247 gaagtaatgaattgtagcacactcaccaatggatgctaacattgtatttgacatggttaaccaccttaacaagaacagtatcatcttctctagcatagat 29552148  T
Q  695 ggtggggccagggaaattcccatttacagttacaatgggcttggttgaacacaatcttgtgacattcttcatcaccacctgaattaacattaataatatt 794  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||      
T  29552147 ggtggggccagggaaattcccatttatagttacaatgggtttggttgaacacaatcttgtggcattcttcatcaccacctgaattaacaataataataaa 29552048  T
Q  795 acattatcaaccttaatggtcatgaagtagatat 828  Q
    ||||||||||||||||||||||||||||||||||    
T  29552047 acattatcaaccttaatggtcatgaagtagatat 29552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 6102946 - 6102876
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| |||| |||||||||||||| ||  |||||||||||||||| |||||||||||||||    
T  6102946 caatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaata 6102876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 12036308 - 12036373
Alignment:
Q  458 gttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||| |||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  12036308 gttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaata 12036373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 523
Target Start/End: Complemental strand, 16802146 - 16802075
Alignment:
Q  452 acaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||| | |||||||| |||||||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  16802146 acaatggttcatgaaactataaatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaata 16802075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 15139166 - 15139234
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaat 522  Q
    |||||||||||||||||| |||| ||||||||| ||| ||||||||| |||||  ||||||||||||||    
T  15139166 aatggttaaggaaactataaataaaaaatttgtcttgaaaatataagatttgatttttgattaagtaat 15139234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 35626712 - 35626655
Alignment:
Q  447 taaggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagtttt 504  Q
    |||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||    
T  35626712 taaggacaatggttaaggaatccattaatagaaattttgttttgaaaatataagtttt 35626655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 3600228 - 3600158
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||| ||||||| |||| || |||||| ||| |||||||||||||||  ||| |||||||||||    
T  3600228 caatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaattttaattaagtaata 3600158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 406
Target Start/End: Complemental strand, 35054065 - 35053903
Alignment:
Q  244 ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaattgt 343  Q
    |||||||||||||||||||||||||| |  || || || ||||||   ||||||||||||||   |||||| |||||||| ||||| | |||||| ||||    
T  35054065 ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaagttgt 35053966  T
Q  344 acatatagacttgacctggttgaattgggcattgggttatgtatgctggcccatcagcccaac 406  Q
    | | | ||  ||| ||||  ||||| |||||||| || |  ||||||||| |||||| |||||    
T  35053965 aaacaaagctttgtcctgtctgaatagggcattgtgtgacatatgctggctcatcagaccaac 35053903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 406
Target Start/End: Complemental strand, 35070377 - 35070215
Alignment:
Q  244 ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaattgt 343  Q
    |||||||||||||||||||||||||| |  || || || ||||||   ||||||||||||||   |||||| |||||||| ||||| | |||||| ||||    
T  35070377 ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaagttgt 35070278  T
Q  344 acatatagacttgacctggttgaattgggcattgggttatgtatgctggcccatcagcccaac 406  Q
    | | | ||  ||| ||||  ||||| |||||||| || |  ||||| |||||||||| |||||    
T  35070277 aaacaaagctttgtcctgtctgaatagggcattgtgtgacatatgccggcccatcagaccaac 35070215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 35290757 - 35290683
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaatatt 525  Q
    ||||||| ||||| || |||| | |||||||||||| ||  ||||||| |||||||| |||||||||||||||||    
T  35290757 gacaatgattaagtaatctataattagaaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatt 35290683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 39034458 - 39034516
Alignment:
Q  465 aaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||| ||||||||||  || ||| |||||||||||||||| |||||||||||||||    
T  39034458 aaactattaatagaaaataggtcttgaaaatataagttttgacttttgattaagtaata 39034516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 2033566 - 2033502
Alignment:
Q  459 ttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||| |||| |||||||   ||  |||||||||||||||| |||||||||||||||    
T  2033566 ttaaggaaactataaataaaaaatttaggttaaaaatataagttttgacttttgattaagtaata 2033502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 35349387 - 35349441
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttg 505  Q
    ||||||| |||| ||| |||| |||||||||||| ||||| ||||||||||||||    
T  35349387 gacaatgattaaagaatctataaatagaaaatttattttgaaaatataagttttg 35349441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 6830385 - 6830324
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgatt 515  Q
    |||||||||||||  ||| |||||||||| ||| ||| ||||||||||| ||| ||||||||    
T  6830385 aatggttaaggaatttataaatagaaaatgtgtcttgaaaatataagttctgaaatttgatt 6830324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 196 - 412
Target Start/End: Complemental strand, 25091732 - 25091516
Alignment:
Q  196 ataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatat 295  Q
    |||||||||||||| || ||| | ||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| || ||||||||||| | ||    
T  25091732 ataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggacagtagccctaagccaaaggacat 25091633  T
Q  296 gtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaattgtacatatagacttgacctggttgaattgggcattgggttatgtatgctggccc 395  Q
    | ||||||||||||||||| |||||||| ||||| || || |||||||||| ||||   || || |||||||| |||||||||||||| |||||||||||    
T  25091632 gagcatgccaccaaagtgtgcctctttggcctgtaagagtgaaattgtacaaataggtctggcccggttgaatcgggcattgggttatatatgctggccc 25091533  T
Q  396 atcagcccaacctgttc 412  Q
    ||| |||||||| ||||    
T  25091532 atcggcccaacccgttc 25091516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 615 - 775
Target Start/End: Complemental strand, 25091393 - 25091233
Alignment:
Q  615 actcaccaatggatgctaacattgtatttgacatggttaaccaccttaacaagaacagtatcatcttctctagcatagatggtggggccagggaaattcc 714  Q
    |||||||| || |||||||||||||||||||||||||| || ||||| |  |||||| | ||||||||||| |||||||| || || |||||||| || |    
T  25091393 actcaccagtgtatgctaacattgtatttgacatggttgacaacctttattagaacattgtcatcttctctggcatagattgtaggaccagggaactttc 25091294  T
Q  715 catttacagttacaatgggcttggttgaacacaatcttgtgacattcttcatcaccacctg 775  Q
    ||||||| |||||||| || ||||||||||||||||||||| |||| |||||||| |||||    
T  25091293 catttactgttacaattggtttggttgaacacaatcttgtggcatttttcatcacaacctg 25091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 25091889 - 25091821
Alignment:
Q  3 gccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25091889 gccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa 25091821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 41287874 - 41287948
Alignment:
Q  449 aggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||| ||||||||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||    
T  41287874 aggacaatgattaaggaaactataaatagaaaatttgttttaaaaatataagttttgatttttgattaagtaata 41287948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 34228249 - 34228323
Alignment:
Q  449 aggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||||||| |||| ||||||||| ||  |||||||| ||||||| ||||||||| |||||    
T  34228249 aggacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataaattttgacttttgattaaataata 34228323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 48252262 - 48252336
Alignment:
Q  449 aggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||| ||||||||||||| |||| |||| ||||||| | ||| |||||||||||||||| ||||| ||| |||||    
T  48252262 aggaaaatggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgacttttgagtaaataata 48252336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 45408664 - 45408735
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaatatt 525  Q
    |||||||||| |||||||| |||| || |||||| ||  |||||||| ||||||| |||||||||||||||||    
T  45408664 caatggttaaagaaactattaataaaatatttgtcttaaaaatataacttttgac-tttgattaagtaatatt 45408735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 19202180 - 19202249
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaat 522  Q
    |||||||||||||| | || |||||| ||||| | ||| |||||||||||||| | ||||||||| ||||    
T  19202180 caatggttaaggaatccataaatagataatttttcttgaaaatataagttttggcttttgattaaataat 19202249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 1870489 - 1870559
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||| |||||||||||||||    
T  1870489 caatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaata 1870559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 13835953 - 13835884
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||| ||||||| |||||||||| ||| ||| |||||||||||||||| ||| |||||||||||    
T  13835953 aatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgactttttattaagtaata 13835884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 5444487 - 5444557
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||| |||| |||||||| |||| ||| ||||| ||| |||||||||||||||| ||| |||||||||||    
T  5444487 caatgattaaagaaactataaataaaaattttgtcttgaaaatataagttttgacttttaattaagtaata 5444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 523
Target Start/End: Complemental strand, 33635606 - 33635561
Alignment:
Q  478 aaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  33635606 aaaatttgtcttgaaaatataaattttgacttttgattaagtaata 33635561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 4860234 - 4860165
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| ||  |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  4860234 aatggttaaggaaattacaaatagaaaatttgttttgaaaatataagttttgacttttgattaagtaata 4860165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 51100021 - 51100091
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||    
T  51100021 caatggttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaata 51100091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 250 - 434
Target Start/End: Complemental strand, 4382639 - 4382455
Alignment:
Q  250 aaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaattgtacatat 349  Q
    ||||| ||||| |||||||| ||||||| ||| ||||||   | ||||||||||||   ||||||||||||||| || || | ||| ||||||||  |||    
T  4382639 aaaataacaatggcaccatggacagttgatcttagccaattaacatgtgcatgccaaagaagtgttcctctttgaccagtaatggtgaaattgtatgtat 4382540  T
Q  350 agact-tgacctggttgaattgggcattgggttatgtatgctggcccatcagcccaacctgttctcaactgtctgattccatgcct 434  Q
    | ||| || || ||||||||||| ||||| || || ||||| || ||||||||||||||||||||||| || || || ||||||||    
T  4382539 a-actatgtccaggttgaattggacattgtgtgatatatgcaggtccatcagcccaacctgttctcaattgcctaataccatgcct 4382455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 45921335 - 45921404
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||||    
T  45921335 aatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaata 45921404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 2908206 - 2908276
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||  ||||| |||||||||    
T  2908206 caatggttaaggaaactataaatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaata 2908276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 16831096 - 16831166
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||| ||||||| |||| ||||||||||||  |||||||| ||||||| |||||||||||||||    
T  16831096 caatggttaagaaaactataaatataaaatttgttttaaaaatataaattttgacttttgattaagtaata 16831166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 40298089 - 40298023
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagt 519  Q
    |||||||||| |||||||| |||||||||||| ||||| |||||||||||||||  |||||||||||    
T  40298089 caatggttaatgaaactataaatagaaaatttattttgaaaatataagttttgatttttgattaagt 40298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 453 - 521
Target Start/End: Complemental strand, 9119359 - 9119291
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaa 521  Q
    |||||||||| ||| |||| ||||||||||||||  || |||||||||||||||| |||||||||||||    
T  9119359 caatggttaaagaatctataaatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaa 9119291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 28299283 - 28299355
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||| ||| |||||||||||| | ||| |||||||||||||| | ||||||||| |||||    
T  28299283 gacaatggttaaggaaattataaatagaaaatttatattgaaaatataagttttgtcttttgattaaataata 28299355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 452 - 523
Target Start/End: Complemental strand, 53142900 - 53142829
Alignment:
Q  452 acaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||| |||| |||| |||||||||  || ||||||||||||| || |||||||||||||||    
T  53142900 acaatggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaata 53142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 519
Target Start/End: Complemental strand, 55090895 - 55090832
Alignment:
Q  456 tggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagt 519  Q
    |||||||||||||||| |||  ||||||||| ||| |||||||||||||||| |||||||||||    
T  55090895 tggttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagt 55090832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 48400984 - 48400926
Alignment:
Q  465 aaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||| |||| ||||||||||||| |||||||| |||| |||||| |||||||||||    
T  48400984 aaactataaataaaaaatttgttttgaaaatataaattttaacatttaattaagtaata 48400926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 523
Target Start/End: Original strand, 14347115 - 14347187
Alignment:
Q  450 ggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||| |||||||||||||||| |||| ||||||| | ||  |||||||||||||||  |||||||||||||||    
T  14347115 ggacactggttaaggaaactataaata-aaaatttatcttaaaaatataagttttgatttttgattaagtaata 14347187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 32325130 - 32325072
Alignment:
Q  465 aaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||  ||| ||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  32325130 aaactatagataaaaaatttgtcttgaaaatataatttttgacttttgattaagtaata 32325072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 468 - 522
Target Start/End: Complemental strand, 37992955 - 37992901
Alignment:
Q  468 ctatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaat 522  Q
    |||| ||||||| |||||||||| |||||||| ||||||  ||||||||||||||    
T  37992955 ctataaatagaagatttgttttgaaaatataaattttgatttttgattaagtaat 37992901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 53145249 - 53145195
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttg 505  Q
    ||||||||||||||||||||| |||| ||||||| |  || ||||||||||||||    
T  53145249 gacaatggttaaggaaactataaataaaaaatttatcatgaaaatataagttttg 53145195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 34458791 - 34458848
Alignment:
Q  449 aggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttga 506  Q
    ||||||||||||||| |||| || |||  ||||||||| ||| |||||||||||||||    
T  34458791 aggacaatggttaagaaaaccataaatgaaaaatttgtcttgaaaatataagttttga 34458848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 18009 - 18081
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||| |||||||||||||||| |||||||||||| | ||  |||||||||||||||| |||||||||||||||    
T  18009 gacattggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaata 18081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 8656415 - 8656343
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||||| |||||||||||||| ||  ||| ||||||||| || |||||||||||||||    
T  8656415 gacaatggttaaggaaactataaatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaata 8656343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 24937949 - 24937879
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||  ||||||| ||| |||||||||||    
T  24937949 caatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgacttttaattaagtaata 24937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 523
Target Start/End: Original strand, 39786444 - 39786517
Alignment:
Q  450 ggacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||| |||| ||||||||| |||| ||| ||||||||||||| || ||||||||| |||||    
T  39786444 ggacaatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataata 39786517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 460 - 523
Target Start/End: Complemental strand, 47537536 - 47537473
Alignment:
Q  460 taaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||| |||  ||||||||| ||| |||||||||||||||  |||||||||||||||    
T  47537536 taaggaaactataaatgaaaaatttgtcttgaaaatataagttttgatttttgattaagtaata 47537473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 1112147 - 1112217
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||| || |||||||||| |||||||||||||||||| || ||||| ||||||| ||| || ||||||||    
T  1112147 caatgattgaggaaactataaatagaaaatttgttttgaaattataaattttgacttttaatgaagtaata 1112217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 21857615 - 21857665
Alignment:
Q  473 aatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||| |||||    
T  21857615 aatagaaaatttgtcttgtaaatataagttttgatatttggttaattaata 21857665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 28664542 - 28664595
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttga 506  Q
    |||||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  28664542 caatggttaaggaatctataaatagaaaatttgtattgaaaatatacgttttga 28664595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 27915189 - 27915251
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgatt 515  Q
    ||||| ||||||||| |||  ||||||||||||| ||  |||||||||||||||| |||||||    
T  27915189 caatgattaaggaaattatatatagaaaatttgtgttaaaaatataagttttgacttttgatt 27915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 32800325 - 32800253
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||  ||||||||| |||||    
T  32800325 gacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataagttttgatttttgattaaataata 32800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 523
Target Start/End: Original strand, 20208007 - 20208078
Alignment:
Q  452 acaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||| ||| |||| |||| ||||||||||||| |||||||||| ||||| |||||||||||||||    
T  20208007 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaata 20208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 523
Target Start/End: Original strand, 22102030 - 22102101
Alignment:
Q  452 acaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||| ||| |||| |||| ||||||||||||| |||||||||| ||||| |||||||||||||||    
T  22102030 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaata 22102101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 28048736 - 28048806
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||| |||||||||| ||| |||||||||||||||||  |||||||||||||||| ||| |||||||||||    
T  28048736 caatagttaaggaaattataaatagaaaatttgttttaaaaatataagttttgacttttaattaagtaata 28048806  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 2398125 - 2398056
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||| |||||||| |||| |||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  2398125 aatgattaaggaatctataaatagaaaatttatcttgaaaatataagttttgacttttgattaagtaata 2398056  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 6770949 - 6770882
Alignment:
Q  456 tggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||||| |||||||||||| | ||| |||||||| ||||||| ||||||||| |||||    
T  6770949 tggttaaggaaactataaatagaaaatttatcttgaaaatataaattttgacttttgattaaataata 6770882  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 11065862 - 11065932
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||||||| | || ||||||| | ||| |||||||||||||||| |||||||||||||||    
T  11065862 caatggttaaggaaactataattataaaatttctcttgaaaatataagttttgacttttgattaagtaata 11065932  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 31160844 - 31160774
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||||| ||| |||||||||||||| ||  |||||||| ||||||| |||||||||||||||    
T  31160844 caatggttaaggaaaatataaatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaata 31160774  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 27618 - 27546
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||| |||||| |||||| |||| ||||||||| ||  |||||||||||||||| |||||||||||||||    
T  27618 gacaatgattaagggaactataaataaaaaatttgtctttaaaatataagttttgacttttgattaagtaata 27546  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 39283788 - 39283718
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||| |||||||| |||||||||||| | ||  |||||||||||||||  |||||||||||||||    
T  39283788 caatggttaatgaaactataaatagaaaatttatcttaaaaatataagttttgatttttgattaagtaata 39283718  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 48375361 - 48375293
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagt 519  Q
    |||||| |||||| ||||||| |||| |||| |||| | | ||||||||||||||||||||||||||||    
T  48375361 gacaatagttaagaaaactataaatataaaaattgtctagaaaatataagttttgacatttgattaagt 48375293  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 27283407 - 27283339
Alignment:
Q  454 aatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||||||| |||||||||||| |||| | ||||||||||||||| ||||||||| |||||    
T  27283407 aatggttaaggaaactataaatagaaaatttattttat-aatataagttttgacttttgattaaataata 27283339  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 523
Target Start/End: Complemental strand, 10452012 - 10451947
Alignment:
Q  458 gttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| |||| ||| ||||| ||  |||||||||||||||| |||||||||||||||    
T  10452012 gttaaggaaactataaataaaaattttgtattaaaaatataagttttgacttttgattaagtaata 10451947  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 521
Target Start/End: Complemental strand, 4989813 - 4989745
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaa 521  Q
    ||||||||||| ||||||| |||| ||||||||| ||| |||||||||||||||  |||||| ||||||    
T  4989813 caatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaa 4989745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 40607416 - 40607346
Alignment:
Q  453 caatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||| ||  ||| |||||||||||| | ||  |||||||||||||||| |||||||||||||||    
T  40607416 caatggttaagaaatttataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaata 40607346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 12958995 - 12958923
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||| |||| ||| |||| |||||||||||||| ||  ||||||||||||| |  |||||||||||||||    
T  12958995 gacaatgattaaagaatctataaatagaaaatttgtcttcaaaatataagtttttatttttgattaagtaata 12958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 34085199 - 34085271
Alignment:
Q  451 gacaatggttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||||||| ||   || |||| ||||||||||||| |||||||||||||||| ||| |||||| ||||    
T  34085199 gacaatggttaagaaattcataaataaaaaatttgttttgaaaatataagttttgacttttaattaagcaata 34085271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 523
Target Start/End: Complemental strand, 18131289 - 18131239
Alignment:
Q  473 aatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    |||||||||||||| ||| ||||||||||||||||   |||||||||||||    
T  18131289 aatagaaaatttgtcttgaaaatataagttttgactactgattaagtaata 18131239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 523
Target Start/End: Complemental strand, 17647 - 17582
Alignment:
Q  458 gttaaggaaactatgaatagaaaatttgttttgtaaatataagttttgacatttgattaagtaata 523  Q
    ||||||||| |||| |||||||||||||  ||| |||||||||||| ||  ||||||||| |||||    
T  17647 gttaaggaatctataaatagaaaatttgagttgaaaatataagtttcgaattttgattaattaata 17582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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