View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_10 (Length: 355)
Name: NF8209_low_10
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 45168861 - 45168609
Alignment:
| Q |
16 |
ctttgaatagagatagtgtgaagcatttgttgataat----cactctttccttttgttttcctcatgaatcccaccattttcctatgtttagaa-cccta |
110 |
Q |
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| T |
45168861 |
ctttgaatagagatagtgtgaagcatttgttgataattaatcactctttccttttgttttcctcatgaatcccaccattttcctatgtttagaaacccta |
45168762 |
T |
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| Q |
111 |
actctctttctctttgtgggttcaccgtaaaaagagagaaatgaatccacattttgagaaaggctcttttgggtccaatcaaaatgaaaaagaccccatt |
210 |
Q |
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| T |
45168761 |
actctcttt------gtgggttcaccgtaaaaagagagaaatgaatccacattttaagaaaggctgttttgggtccaatcaaaatgaaaaagaccccatt |
45168668 |
T |
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| Q |
211 |
ttgatccccacaaagtgagaaaagcatgttctta-ccctctagatatgatgtacgaggg |
268 |
Q |
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| T |
45168667 |
ttgatccccacaaaatgagaaaagcatgttcttacccctctagatatgatgtaagaggg |
45168609 |
T |
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