View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_11 (Length: 322)
Name: NF8209_low_11
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 333690 - 333493
Alignment:
| Q |
17 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
116 |
Q |
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| T |
333690 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
333591 |
T |
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| Q |
117 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacaggaattgatcgatcgataaggaac |
214 |
Q |
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| T |
333590 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacagaaattgatcgatcgataaggaac |
333493 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 42169015 - 42168930
Alignment:
| Q |
90 |
ttgagaagatttccaagcaacttacagtcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcat |
175 |
Q |
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| T |
42169015 |
ttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcat |
42168930 |
T |
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