View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_14 (Length: 300)
Name: NF8209_low_14
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_14 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 33234 - 32961
Alignment:
| Q |
8 |
ttctgcaccatatattctttacaacgtagaaattgacaagatttacaaagaataggaagaaaaaagtatggaaaaaacaaatattggatacattgatatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33234 |
ttctgcaccatatattctttacaacgtagaaattgacaagatttacaaagaataggaagaaaaa-gtatggaaaaaacaaatattggatacattgatatt |
33136 |
T |
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| Q |
108 |
gttcaaggaacataaattcagaagcttaattttctttttacaagaattaataaatttctttgatctattggcaatcaacacttacaagcactcgaaaaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
33135 |
attcaaggaacataaattcagaagcttaattttctttttacaagaactaataaatttctttgatctattggaaatcaagacttacaagcactcgaaaaga |
33036 |
T |
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| Q |
208 |
aagatgaatatgagaagaaaagtacagatgaatcagttaattgaatacacaatcagaaagaattaaggtactact |
282 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33035 |
aagatgaatatgagaagaaaagtacagatgaatgagttaattgaatacacaatcagaaagaattaaggtactact |
32961 |
T |
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