View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_15 (Length: 296)
Name: NF8209_low_15
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 32589357 - 32589628
Alignment:
| Q |
10 |
cagagatttcccccaaaaccaatgattttgttgagtgctgtaaagatcattacacaccatcaaatccatatgaatttattgtttttcacaatacaatgaa |
109 |
Q |
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| T |
32589357 |
cagagattttccccaaaaccaatgattttgttgagtgctgcaaagatcattacacaccatcaaatccatatgaatttattgtttttcacaatacaatgaa |
32589456 |
T |
|
| Q |
110 |
aaatgagcctaaccaactctcttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgc |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32589457 |
aaatgagcctaactaactctcttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgc |
32589556 |
T |
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| Q |
210 |
atttgatgaacttctattccataaaattactgctactttgttattagtgagaggacctgcccatacctatct |
281 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32589557 |
atttgatgaacttctattccataaaatcactgctactttgttattagtgagaggacctgcccatacctatct |
32589628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 32599801 - 32600076
Alignment:
| Q |
8 |
agcagagatttcccccaaaaccaatgattttgttgagtgctgtaaagatcattacacaccatcaaatccatatgaattta--ttgtttttcacaatacaa |
105 |
Q |
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|||||||||||| ||| |||||| ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||| ||| |||||||||| |
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| T |
32599801 |
agcagagatttcacccgaaaccattgattgtgttgagtgctgcaaaaatcattacacaccatcaaaaccatatgaatttaaattgctttgcacaatacaa |
32599900 |
T |
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| Q |
106 |
tgaaaaatgagcctaaccaactctcttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactg |
205 |
Q |
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| T |
32599901 |
tgaaaaatgagcctaaccaactctcttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactg |
32600000 |
T |
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| Q |
206 |
ttgcatttgatgaacttctattccataaaattactgctactttgttattagtgagaggacctgcccatacctatct |
281 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600001 |
ttgcatttgatgaacttctattccataaaatcactgctactttgttattagtgagaggacctgcccatacctatct |
32600076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 24884465 - 24884315
Alignment:
| Q |
127 |
tctcttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttgatgaacttctat |
226 |
Q |
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| T |
24884465 |
tctctcacctcccataaatctcttgcatcaattgaagttcctggttttagacctaggtcagaccaagatgcagttactattgctttcgatgaacttctat |
24884366 |
T |
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| Q |
227 |
tccataaaattactgctactttgttattagtgagaggacctgcccatacct |
277 |
Q |
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||||||| | || |||| |||||| | |||||||||||||||| |||| |
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| T |
24884365 |
tccataagacgaccgctagcctgttatcactgagaggacctgcccaaacct |
24884315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 131 - 277
Target Start/End: Original strand, 34577227 - 34577373
Alignment:
| Q |
131 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttgatgaacttctattcca |
230 |
Q |
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||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttgatgaacttctattcca |
34577326 |
T |
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| Q |
231 |
taaaattactgctactttgttattagtgagaggacctgcccatacct |
277 |
Q |
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||| | |||||||||||||| ||| | || |||||||||||||||| |
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| T |
34577327 |
taagaccactgctactttgtttttactaaggggacctgcccatacct |
34577373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 34592723 - 34592870
Alignment:
| Q |
131 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttgatgaacttctattcca |
230 |
Q |
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|||||||||||||||||||||||||||| || | ||||| || || ||||| || ||||| |||||| |||| |||||||||||||| || |||||||| |
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| T |
34592723 |
ttacctcccataaatctcttgcatcaacaatggcttctggttctaggcctatttcagaccaggatgcaattaccgttgcatttgatgagctcctattcca |
34592822 |
T |
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| Q |
231 |
taaaattactgctactttgttattagtgagaggacctgcccataccta |
278 |
Q |
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|||||| ||||||| ||||| | | | |||||||||||||| ||||| |
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| T |
34592823 |
taaaataactgctagcttgttttcacttagaggacctgcccaaaccta |
34592870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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