View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_17 (Length: 266)
Name: NF8209_low_17
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 17143518 - 17143736
Alignment:
| Q |
28 |
gagtgagaagaaagatacaaactaaccagcaaggaatagatgcagttgatgatactttgaaaaagagagaaagaagaaagctcaacgtctccaagatgac |
127 |
Q |
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| T |
17143518 |
gagtgataagaaagatagaaactaaccagcaaggaatagatgcagttgatgatactttgaaaaagagagaaagaagaaagctcaacgtctccaagatgac |
17143617 |
T |
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| Q |
128 |
cagcatagactgaagttgaagagtttgtgaggaactgaaacagtgaacacaaagccactggaaatgctatcttccatatcttcactgtctcactccacaa |
227 |
Q |
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| T |
17143618 |
cagcatagactgaagttgaagagtttgtgaggaactgaaacagtgaacacaaggccactggaagtgctatcttccatatcttcactgtctcactccacaa |
17143717 |
T |
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| Q |
228 |
aacatgtttaacatccttc |
246 |
Q |
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| T |
17143718 |
aacatgtttaacatccttc |
17143736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 17155704 - 17155907
Alignment:
| Q |
43 |
tacaaactaaccagcaaggaatagatgcagttgatgatactttgaaaaagagagaaagaagaaagctcaacgtctccaagatgaccagcatagactgaag |
142 |
Q |
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||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||| || |||| |||||||||||||||||||||| |||| |
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| T |
17155704 |
tacaaactaaccagcaaagaatagatgcaattgaggacactttgaaaaagagagaaagaagagagttcaatatctccaagatgaccagcatagatggaag |
17155803 |
T |
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| Q |
143 |
ttgaagagtttgtgaggaactgaaacagtgaacacaaagccactggaaatgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatc |
242 |
Q |
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| T |
17155804 |
ttgaagtgtttgtgaggtattgaaacaaataacacaaagccactggaagtgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatc |
17155903 |
T |
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| Q |
243 |
cttc |
246 |
Q |
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|||| |
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| T |
17155904 |
cttc |
17155907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 17170318 - 17170398
Alignment:
| Q |
162 |
ctgaaacagtgaacacaaagccactggaaatgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatc |
242 |
Q |
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|||||| ||| || ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||| ||||| |
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| T |
17170318 |
ctgaaaaagtaaagacaaagccactggaattgctatcttccatatcttcaatgtctcattccacaaaacatatttcacatc |
17170398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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