View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_18 (Length: 258)
Name: NF8209_low_18
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 37248876 - 37249085
Alignment:
| Q |
18 |
gaattgagaattaagaatagagggaagaagagaattcgttgtgtaattttcatcaactctgatttgtcggtggttggtggaatttgaagatcggtgttga |
117 |
Q |
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| T |
37248876 |
gaattgagaattaagaatagagggaagaagagaattcgttgtgtaattttcatcaactctgatttgtcggtggttggtggaatttgaagatcggtgttga |
37248975 |
T |
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| Q |
118 |
tagatcgagatttgtggtgtgaaaatgacttcgttgagtagagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgtgc |
217 |
Q |
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| T |
37248976 |
tagatcgagatttgtggtgtgaaaatgacttcgttgagtagagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgtgc |
37249075 |
T |
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| Q |
218 |
acaagtgaga |
227 |
Q |
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| T |
37249076 |
acaagtgaga |
37249085 |
T |
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 46241344 - 46241263
Alignment:
| Q |
142 |
atgacttcgttgagtagagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgtgcacaagt |
223 |
Q |
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| T |
46241344 |
atgacttctttgagcagagaattggtgtttctcatactccaatttctggaggaggagaagttcaaagaatctgtgcacaagt |
46241263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 47415197 - 47415128
Alignment:
| Q |
146 |
cttcgttgagtagagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgt |
215 |
Q |
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| T |
47415197 |
cttcgttaagcagagaactcgtttttctcatactccagtttctcgatgaagagaaattcaaggagtctgt |
47415128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 49954495 - 49954576
Alignment:
| Q |
142 |
atgacttcgttgagtagagaattggtttttctcatacttcagtttcttgatgaggagaagttcaaggaatctgtgcacaagt |
223 |
Q |
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| T |
49954495 |
atgacatctttgagtagagaattggtgtttttgattcttcaatttcttgaagaagagaaattcaaagaaactgttcacaagt |
49954576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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