View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8209_low_2 (Length: 652)

Name: NF8209_low_2
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8209_low_2
NF8209_low_2
[»] scaffold0391 (1 HSPs)
scaffold0391 (1-635)||(12115-12749)
[»] chr8 (17 HSPs)
chr8 (199-504)||(33975301-33975600)
chr8 (199-504)||(33992214-33992513)
chr8 (199-504)||(33952695-33952994)
chr8 (199-504)||(33960001-33960300)
chr8 (1-93)||(33960399-33960491)
chr8 (1-116)||(33992590-33992705)
chr8 (1-94)||(33953092-33953185)
chr8 (1-94)||(33975693-33975786)
chr8 (565-635)||(33952524-33952594)
chr8 (322-482)||(33913545-33913705)
chr8 (576-635)||(33959824-33959883)
chr8 (576-635)||(33975124-33975183)
chr8 (576-635)||(33992044-33992103)
chr8 (4-86)||(33942639-33942721)
chr8 (403-482)||(33942275-33942353)
chr8 (573-635)||(33941930-33941992)
chr8 (577-629)||(33913197-33913249)
[»] chr7 (5 HSPs)
chr7 (199-504)||(8277762-8278061)
chr7 (1-94)||(8277567-8277660)
chr7 (382-504)||(2891492-2891614)
chr7 (576-635)||(8278172-8278231)
chr7 (565-613)||(2891693-2891741)


Alignment Details
Target: scaffold0391 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 12749 - 12115
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaacatacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaacatacaa 12650  T
Q  101 gatcaattgttgaaaaataaggaatgaagattgcatcatgtttttaataccactttctagttttatgttggtgaatataattttgatgaaggtacaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12649 gatcaattgttgaaaaataaggaatgaagattgcatcatgtgtttaataccactttctagttttatgttagtgaatataattttgatgaaggtacaaata 12550  T
Q  201 ttactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatcagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12549 ttactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacaagtcatcagg 12450  T
Q  301 ctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggtaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12449 ctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttagtgcattggtaaa 12350  T
Q  401 ttccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagaggtt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12349 ttccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagaggtt 12250  T
Q  501 aatttctgagttaatatcattcttgttatgtatttaaggatctaagttagcctagaagaaaatttaattgtcattgtaccttgctattatgacattagcc 600  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12249 aatttctgagttaatatcattcttgttatatatttaaggatctaagttagcctagaagaaaatataattgtcattgtaccttgctattatgacattagcc 12150  T
Q  601 agattcatggagcctaatttgttgatgatttccat 635  Q
    ||||||||||||||||||||||| |||||||||||    
T  12149 agattcatggagcctaatttgtttatgatttccat 12115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 5e-70; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 199 - 504
Target Start/End: Complemental strand, 33975600 - 33975301
Alignment:
Q  199 tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca 298  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||||||| ||| ||  ||||| |||||||| |||||||    
T  33975600 tattactaaccagttgataccgacaatatacgggcagcaagctgttgaggattttgtttaacacacaatctcataaactttgaaaatatacgggtcatca 33975501  T
Q  299 ggctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggta 398  Q
     || ||| ||||||||| | |  |      ||  ||| || | |||||||||||||||||| |||||||| | ||||| |||||| ||||||| ||||||    
T  33975500 agccttgctgcttctccgcgagcc------cacttttattgttattcatgtcaataatcagtctttttctttgctcaaatggttccttggtgctttggta 33975407  T
Q  399 aattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagagg 498  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |  ||||||||||||||||| ||| |||||||||||    
T  33975406 aattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcacttgcatttttcctggtaaatgagcagagg 33975307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 199 - 504
Target Start/End: Complemental strand, 33992513 - 33992214
Alignment:
Q  199 tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca 298  Q
    |||||||||||||||||||| ||||||||  | ||||| ||||||||  |||||||||||| ||||||| |||  | ||||||||||||||| |||| ||    
T  33992513 tattactaaccagttgataccgacaatatgtgagcagcaagctgttggggattttgtttaatacacaatctcattacttttgacaatatacgggtcaaca 33992414  T
Q  299 ggctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggta 398  Q
     |||||| ||||||||| | |      | |||  | | |||| ||| |||||||||||||| |||||||| | ||||| |||||  ||||||| ||||||    
T  33992413 agctttgctgcttctccgcga------gctcacttctatttttattaatgtcaataatcagtctttttctttgctcaaatggttgcttggtgctttggta 33992320  T
Q  399 aattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagagg 498  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||||| ||| ||||| |||||    
T  33992319 aattccaagatctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtctgtgtcacttgcatttttcctggtaaatgagaagagg 33992220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 199 - 504
Target Start/End: Complemental strand, 33952994 - 33952695
Alignment:
Q  199 tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca 298  Q
    ||||||||||||| |||||| |||||||||||||||| |||||||||  ||||  |||||||||||||| ||| ||  |||||||||||||  |||||||    
T  33952994 tattactaaccagctgataccgacaatatacgggcagtgagctgttgaggattccgtttaacacacaatctcataaactttgacaatatacaggtcatca 33952895  T
Q  299 ggctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggta 398  Q
     || ||| ||||||||| | |  |      ||  ||| |||| ||| |||||||||||||| |||||||| | ||||| |||||| |||| || ||||||    
T  33952894 agccttgctgcttctccgcgagcc------cacttttatttttattaatgtcaataatcagtctttttctttgctcaaatggttccttggcgctttggta 33952801  T
Q  399 aattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagagg 498  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |  ||||||||||||||||| ||| |||||||||||    
T  33952800 aattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcacttgcatttttcctggtaaatgagcagagg 33952701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 199 - 504
Target Start/End: Complemental strand, 33960300 - 33960001
Alignment:
Q  199 tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca 298  Q
    ||||||||||||| |||||| |||||||||||||||| |||||||||  ||||  |||||||||||||| ||| ||  |||||||||||||  |||||||    
T  33960300 tattactaaccagctgataccgacaatatacgggcagtgagctgttgaggattccgtttaacacacaatctcataaactttgacaatatacaggtcatca 33960201  T
Q  299 ggctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggta 398  Q
     || ||| ||||||||| | |  |      ||  ||| |||| ||| |||||||||||||| |||||||| | ||||| |||||| ||||||| ||||||    
T  33960200 agccttgctgcttctccgcgagcc------cacttttatttttattaatgtcaataatcagtctttttctttgctcaaatggttccttggtgctttggta 33960107  T
Q  399 aattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagagg 498  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||||| ||| |||||||||||    
T  33960106 aattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctggtaaatgagcagagg 33960007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33960491 - 33960399
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaa 93  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||||||||||||| ||||||||   |||||| |||||||||||||| ||||||    
T  33960491 tgcttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaa 33960399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33992705 - 33992590
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaacatacaa 100  Q
    ||||||||||| | ||||||||| ||||||||| |||||| |||||||||||| |||||||||| |||||| | ||||||||||||  ||||||  |||     
T  33992705 tgcttggtatgcaaatttaaaatcaaaacctcgacctgagttggttgcatttgagaccaatctgacgcacatgcttcatctgcaaatttgaaactaacac 33992606  T
Q  101 gatcaattgttgaaaa 116  Q
     ||||||||| |||||    
T  33992605 aatcaattgtggaaaa 33992590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33953185 - 33953092
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaac 94  Q
    ||||||||||||||||||||||| | ||||||  |||||||||||| |||||| ||||||||   |||||| |||||||||||||| |||||||    
T  33953185 tgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaac 33953092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33975786 - 33975693
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaac 94  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||||| || ||||||||   |||||| |||||||||||||| |||||||    
T  33975786 tgcttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatatgagaccaatccaacgcacatgtttcatctgcaaatgtgaaac 33975693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 565 - 635
Target Start/End: Complemental strand, 33952594 - 33952524
Alignment:
Q  565 taattgtcattgtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    |||| ||||| |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  33952594 taatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat 33952524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 322 - 482
Target Start/End: Complemental strand, 33913705 - 33913545
Alignment:
Q  322 caccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggtaaattccaagatctcttagaagat 421  Q
    ||||| |||||| ||||||||||    |||||||  || |||||||| |  ||||||||||| | | ||  ||| ||| |||| || |||||||||||||    
T  33913705 caccggtcatgtgtgttttcatttgcatcaataagaagtctttttctttgttcaattggttcctggttgttttgataatttcctagctctcttagaagat 33913606  T
Q  422 catgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcct 482  Q
    |||||||||  ||||||||| ||||||||| |||| | ||||  |||||||||||||||||    
T  33913605 catgaaggaatatgaagtggctattgtagtagtaactttctgtgtcacttgcatttttcct 33913545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 635
Target Start/End: Complemental strand, 33959883 - 33959824
Alignment:
Q  576 gtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  33959883 gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat 33959824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 635
Target Start/End: Complemental strand, 33975183 - 33975124
Alignment:
Q  576 gtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  33975183 gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat 33975124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 635
Target Start/End: Complemental strand, 33992103 - 33992044
Alignment:
Q  576 gtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  33992103 gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat 33992044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 33942721 - 33942639
Alignment:
Q  4 ttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaa 86  Q
    ||||| |||||||||||||| | |||||| ||  ||||||| |||| ||||||||||||||  || |||||||||||||||||    
T  33942721 ttggtttgaagatttaaaatcagaacctcagcaagagctggctgcacttgggaccaatctgaagcgcaagtttcatctgcaaa 33942639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 482
Target Start/End: Complemental strand, 33942353 - 33942275
Alignment:
Q  403 ccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcct 482  Q
    ||||| ||||| || ||||||||||||| ||||||||| ||| |||||| |||||| ||||  |||||||||||||||||    
T  33942353 ccaagctctctcagcagatcatgaaggacgatgaagtgatta-tgtagtagtaattttctgtgtcacttgcatttttcct 33942275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 33941992 - 33941930
Alignment:
Q  573 attgtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    ||||||||| ||||||| ||||||||||| |||||| ||| ||||||||||||| || |||||    
T  33941992 attgtacctagctattaagacattagccaaattcatagagtctaatttgttgattatgtccat 33941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 33913249 - 33913197
Alignment:
Q  577 taccttgctattatgacattagccagattcatggagcctaatttgttgatgat 629  Q
    ||||||||||||  ||| |||||||||||||| ||| ||||||||||||||||    
T  33913249 taccttgctattgagaccttagccagattcatagagtctaatttgttgatgat 33913197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 199 - 504
Target Start/End: Original strand, 8277762 - 8278061
Alignment:
Q  199 tattactaaccagttgatactgacaatatacgggcagcgagctgttgcagattttgtttaacacacaatgtcagaagttttgacaatatacgagtcatca 298  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||  |||||||||||||||| ||| ||| ||  |||||||||||||| |||||||    
T  8277762 tattactaaccagttgataccgacaatatacgggcagcgaaatgttgaggattttgtttaacacaaaatctcataaactttgacaatatacgggtcatca 8277861  T
Q  299 ggctttgatgcttctcccctaaacaccgttcatgtttgttttcattcatgtcaataatcagcctttttctcttctcaattggttctttggtgcattggta 398  Q
      | ||| ||||||||| | |  |      ||  ||| |||| |||| |||||||||||||  ||| ||| | ||||| |||||| ||||||| ||||||    
T  8277862 aaccttgctgcttctccgcgagcc------cacttttatttttattcttgtcaataatcagtttttctctttgctcaaatggttccttggtgctttggta 8277955  T
Q  399 aattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagagg 498  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |  |||||| || |||| |  ||| |||||||||||    
T  8277956 aattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattgtccgtgtcactttcactttttcaggtaaatgagcagagg 8278055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8277567 - 8277660
Alignment:
Q  1 tgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaac 94  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||   |||| | |||||||||||||| |||||||    
T  8277567 tgcttggtatgaagatttaaaattagaacctcggcctgagctgtttgtatttgagaccaatccaacgcatatgtttcatctgcaaatgtgaaac 8277660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 382 - 504
Target Start/End: Original strand, 2891492 - 2891614
Alignment:
Q  382 tctttggtgcattggtaaattccaagatctcttagaagatcatgaaggatgatgaagtggttattgtagttgtaattgtctgcatcacttgcatttttcc 481  Q
    |||||||||| |||  |||||||||| |||  |||||||| ||||| ||||||||||||| |||| ||||||||||||| ||  |||||||||||||| |    
T  2891492 tctttggtgctttgagaaattccaagctctagtagaagattatgaaagatgatgaagtggctattatagttgtaattgtatgtgtcacttgcattttttc 2891591  T
Q  482 tagtatatgagcagaggttaatt 504  Q
    | ||| ||||||| ||| |||||    
T  2891592 tggtaaatgagcaaagggtaatt 2891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 576 - 635
Target Start/End: Original strand, 8278172 - 8278231
Alignment:
Q  576 gtaccttgctattatgacattagccagattcatggagcctaatttgttgatgatttccat 635  Q
    |||||||| |||||| |||||||||| |||||||  ||||||||| ||||||||||||||    
T  8278172 gtaccttggtattatcacattagccaaattcatgaggcctaatttattgatgatttccat 8278231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 2891693 - 2891741
Alignment:
Q  565 taattgtcattgtaccttgctattatgacattagccagattcatggagc 613  Q
    |||| |||||||||||||||||||| |||| |  |||||||||||||||    
T  2891693 taatagtcattgtaccttgctattaagacaatttccagattcatggagc 2891741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University