View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_3 (Length: 478)
Name: NF8209_low_3
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_3 |
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| [»] scaffold0008 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 31523240 - 31523519
Alignment:
| Q |
1 |
ggtaatttatctattttctgatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtannnnnnngttttgaaaactcggtattcagc |
100 |
Q |
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| T |
31523240 |
ggtaatttatctattttctaatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtatttttttgttttggaaactcggtattcagc |
31523339 |
T |
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| Q |
101 |
cctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagggcctatcacaaattcagaaattttctg |
200 |
Q |
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| T |
31523340 |
cctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagtgcctatcacaaattcagaaattttctg |
31523439 |
T |
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| Q |
201 |
gaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
280 |
Q |
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| T |
31523440 |
gaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
31523519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 322 - 460
Target Start/End: Original strand, 31523517 - 31523655
Alignment:
| Q |
322 |
tgtgaaagttgttaacattgtgttatataattatcttatatcacatgattgcttttgaaattggaattgaagttttttaatttcatttcctctttgtcca |
421 |
Q |
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| T |
31523517 |
tgtgaaagttgttaataatgtgttatataattatcttatatcacatgattgcttttgaaatttgaattgaagttttttaatttcatttcctctttgtcca |
31523616 |
T |
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| Q |
422 |
gaattatcatccctctagggtgcttactcttgtatacca |
460 |
Q |
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| T |
31523617 |
gaattatcatccctctagggtgcttactcttgtatacca |
31523655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 51979 - 51922
Alignment:
| Q |
403 |
ttcatttcctctttgtccagaattatcatccctctagggtgcttactcttgtatacca |
460 |
Q |
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| T |
51979 |
ttcatttcctctctgtgcagaattatcatccctctagggtgcttactcttgtatacca |
51922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 52126 - 52060
Alignment:
| Q |
178 |
atcacaaattcagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgtta |
244 |
Q |
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| T |
52126 |
atcacaaattaagaaattttctggaaattctcaatattgtattgtttaccaacattttagattgtta |
52060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 64431 - 64381
Alignment:
| Q |
407 |
tttcctctttgtccagaattatcatccctctagggtgcttactcttgtata |
457 |
Q |
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| T |
64431 |
tttcctctttgtgcagaaatatcatccctctagggtgcttactcttgtata |
64381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 18096360 - 18096396
Alignment:
| Q |
424 |
attatcatccctctagggtgcttactcttgtatacca |
460 |
Q |
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| T |
18096360 |
attatcatccctccagggtgcttacacttgtatacca |
18096396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 37853966 - 37854002
Alignment:
| Q |
424 |
attatcatccctctagggtgcttactcttgtatacca |
460 |
Q |
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| T |
37853966 |
attatcatccctccagggtgcttacacttgtatacca |
37854002 |
T |
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