View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8209_low_6 (Length: 418)
Name: NF8209_low_6
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 27 - 400
Target Start/End: Complemental strand, 11150694 - 11150319
Alignment:
| Q |
27 |
agataatactgattttctttgactgatactcacatttgcttagccggggtcccttctcttttcgtatgtgaggtatgctctctatcaagatcttcttttc |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11150694 |
agataacactgattttctttgactgatactcacatttgcttagccggggtcccttctcttttcgtatgtgagctatgctctctatcaagatcttcttttc |
11150595 |
T |
|
| Q |
127 |
ttctctcacacttttatattctccatatttgctcagatttatcctccagctggtatttgctatgaggattatatgtaatgttatattatgttttagtaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150594 |
ttctctcacacttttatattctccatatttgctcagatttatcctccagctggtatttgctatgaggattatatgtaatgttatattatgttttagtaat |
11150495 |
T |
|
| Q |
227 |
gtgagggatat--atatttgaaactaagtgaataatatcatataaagagataaagacgaatttgattaccattttatcattctataaatgatatatgtaa |
324 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150494 |
gtgagggatatatatatttgaaactaagtgaataatatcatataaagagataaagacgaatttgattaccattttatcattctataaatgatatatgtaa |
11150395 |
T |
|
| Q |
325 |
ggattatatatagatatatcacaagtgacaagcaagtactgtgtttgataatccttgtttgcatgccagagtttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150394 |
ggattatatatagatatatcacaagtgacaagtaagtactgtgtttgataatccttgtttgcatgccagagtttct |
11150319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University